Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047266 | Potato | nucleus | 86.64 | 71.51 |
| Solyc12g010700.1.1 | Tomato | cytosol | 26.28 | 26.05 |
| KRH22410 | Soybean | mitochondrion, nucleus | 25.39 | 17.12 |
| KRH26928 | Soybean | nucleus | 24.72 | 16.74 |
| KRH70127 | Soybean | mitochondrion, nucleus | 13.14 | 15.53 |
| AT2G14830.1 | Thale cress | mitochondrion | 13.14 | 15.36 |
| CDY33850 | Canola | mitochondrion | 12.25 | 15.15 |
| CDY22873 | Canola | mitochondrion | 12.03 | 15.08 |
| CDX70491 | Canola | mitochondrion | 11.8 | 13.98 |
| Bra006177.1-P | Field mustard | mitochondrion | 10.91 | 13.92 |
| CDX78503 | Canola | mitochondrion | 10.91 | 13.92 |
| Solyc06g066690.2.1 | Tomato | nucleus | 6.9 | 10.03 |
| VIT_12s0059g01700.t01 | Wine grape | golgi | 4.9 | 9.44 |
| Solyc07g022860.2.1 | Tomato | nucleus | 11.36 | 9.26 |
| AT1G51900.1 | Thale cress | mitochondrion | 15.14 | 8.79 |
| Solyc03g120120.2.1 | Tomato | nucleus | 9.13 | 8.61 |
| Solyc12g043150.1.1 | Tomato | nucleus | 6.9 | 6.08 |
| Solyc02g083130.2.1 | Tomato | plastid | 7.35 | 6.08 |
| Solyc05g009550.2.1 | Tomato | mitochondrion | 4.23 | 4.45 |
| Solyc04g072560.2.1 | Tomato | nucleus, unclear | 4.68 | 3.98 |
| Solyc07g032230.2.1 | Tomato | nucleus | 8.46 | 3.54 |
| Solyc04g007230.2.1 | Tomato | mitochondrion | 2.23 | 3.1 |
| Solyc02g085830.2.1 | Tomato | mitochondrion | 1.11 | 2.4 |
Protein Annotations
| EnsemblPlants:Solyc07g054230.2.1 | EnsemblPlantsGene:Solyc07g054230.2 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:Ist1 |
| PANTHER:PTHR12161 | PANTHER:PTHR12161:SF28 | UniParc:UPI000276C3FE | UniProt:K4CFW8 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr7:-:62590082..62591970
Molecular Weight (calculated)
52192.9 Da
IEP (calculated)
7.402
GRAVY (calculated)
-1.074
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDYICTSSV SEEEKYRLVD EIARSCYQQG PLLIEYRREP PDELVNGTSS AAADPLIDDP SDSHQQLLPT ANSTCYPTTK SRKDSVNSLK DNRNEFTGME
101: KRNLNAFILE QNVEKRAAES TTEEDLAELP EQLIYLDDIQ EFESAVKKDM DFEDQRLFMF KAPFVPSRLK IDTRSKFKGI EKKFDSQNPK EGSKTSRKNR
201: TISGKRTRRK SGSTVSDIDS TIYYGDLPES SPDSKPKRQN RRRSTRKSSV SESQRSYRTF AHDTKDQPCY VKFRSTMTFV KCIDDHSRCN ETMENHCSLE
301: HPCYYWITDK KGNVESPLRV PRRRVKTTKD YINQDQNVES MNEHSVNRDT EEVLKSQETC DSTMYSTSRM TYQRARDENQ APYLRAMTLP IERPKDCLVD
401: NFLRSSSFPV QEPENGSYEN RHVHPKLPNY DEIEATFLAL KKEKLQKKC
101: KRNLNAFILE QNVEKRAAES TTEEDLAELP EQLIYLDDIQ EFESAVKKDM DFEDQRLFMF KAPFVPSRLK IDTRSKFKGI EKKFDSQNPK EGSKTSRKNR
201: TISGKRTRRK SGSTVSDIDS TIYYGDLPES SPDSKPKRQN RRRSTRKSSV SESQRSYRTF AHDTKDQPCY VKFRSTMTFV KCIDDHSRCN ETMENHCSLE
301: HPCYYWITDK KGNVESPLRV PRRRVKTTKD YINQDQNVES MNEHSVNRDT EEVLKSQETC DSTMYSTSRM TYQRARDENQ APYLRAMTLP IERPKDCLVD
401: NFLRSSSFPV QEPENGSYEN RHVHPKLPNY DEIEATFLAL KKEKLQKKC
001: MQKTPECPED CREAISSLMF AASGFSELPE LRELRQMFHE KYTDSLALFV NQELVENMSS KPFSMEKKVK LMEDVALEFS IRWDSKDFEK RIVRQNSISV
101: METPKSTNDK YKPVDRNMAL PKREEFEGSE NGVSLNRKTA EASERRDPLF QSDKESYQNG LRGNQRGLTY KERSENVLHA SRSESKDNKA ERKEFYLHSK
201: QNPAREKHQP IFNEGDTIVM KVNYGNLGQG NGHRPGVVDA HKKTEFVASE RKEFYSQSKQ EPSRERHQPI FNDGDTIVMK VKHENHVQGN GHKNGVVDLH
301: KKIEVNASEK LKSSSSKRAD KLVIGFKQES FFQGYKHEKN EEHAHQKVED STSRPPKPNS KSKRAESINP GSRHHNDRES KENAVLVGKS TEEDPSGDNV
401: KGGEYEYDHA NPARKVEERE TERMKSPFYK SLPPPYVKKS IAKARHEKAE ALDNPKARFD GEEGNHPDNG KNVYGAERRN GAGHHEVNDI DNASLKRQTN
501: RRKHIVESGG DDHISSRRRE NSRKGLQVLI DEDEKDSEEK MMDKLLMHYS KKPSSYEKDN VQEESKSRRT HLKKGESDEE MMIHQPARSR SLPAEQLAGP
601: SEPAKTFARA ASFQPERSSE AKHVHPKLPN YDDLAARFAE LKGR
101: METPKSTNDK YKPVDRNMAL PKREEFEGSE NGVSLNRKTA EASERRDPLF QSDKESYQNG LRGNQRGLTY KERSENVLHA SRSESKDNKA ERKEFYLHSK
201: QNPAREKHQP IFNEGDTIVM KVNYGNLGQG NGHRPGVVDA HKKTEFVASE RKEFYSQSKQ EPSRERHQPI FNDGDTIVMK VKHENHVQGN GHKNGVVDLH
301: KKIEVNASEK LKSSSSKRAD KLVIGFKQES FFQGYKHEKN EEHAHQKVED STSRPPKPNS KSKRAESINP GSRHHNDRES KENAVLVGKS TEEDPSGDNV
401: KGGEYEYDHA NPARKVEERE TERMKSPFYK SLPPPYVKKS IAKARHEKAE ALDNPKARFD GEEGNHPDNG KNVYGAERRN GAGHHEVNDI DNASLKRQTN
501: RRKHIVESGG DDHISSRRRE NSRKGLQVLI DEDEKDSEEK MMDKLLMHYS KKPSSYEKDN VQEESKSRRT HLKKGESDEE MMIHQPARSR SLPAEQLAGP
601: SEPAKTFARA ASFQPERSSE AKHVHPKLPN YDDLAARFAE LKGR
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.