Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g052960.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | Solyc05g052960.2.1 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400014529 | Potato | nucleus | 88.66 | 93.78 |
| KRG89505 | Soybean | mitochondrion | 20.59 | 51.85 |
| Solyc06g066690.2.1 | Tomato | nucleus | 33.19 | 51.13 |
| Solyc12g043150.1.1 | Tomato | nucleus | 53.15 | 49.61 |
| CDX87282 | Canola | cytosol | 20.38 | 48.02 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 17.23 | 45.81 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 40.55 | 38.52 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 13.87 | 38.15 |
| CDY41108 | Canola | nucleus | 30.25 | 38.1 |
| Bra008502.1-P | Field mustard | nucleus | 30.25 | 37.99 |
| CDY37561 | Canola | nucleus | 30.04 | 37.93 |
| KRH23458 | Soybean | mitochondrion | 31.72 | 37.84 |
| KRH47048 | Soybean | mitochondrion | 30.25 | 37.7 |
| AT1G79910.1 | Thale cress | nucleus | 30.04 | 37.53 |
| KRH44367 | Soybean | mitochondrion | 24.16 | 35.71 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 25.21 | 26.2 |
| Solyc02g085830.2.1 | Tomato | mitochondrion | 11.13 | 25.48 |
| Solyc04g007230.2.1 | Tomato | mitochondrion | 15.55 | 22.91 |
| EES04550 | Sorghum | nucleus | 30.25 | 21.08 |
| Os02t0159200-01 | Rice | nucleus | 29.83 | 21.04 |
| Solyc12g010700.1.1 | Tomato | cytosol | 19.75 | 20.75 |
| Zm00001d053852_P001 | Maize | nucleus | 29.83 | 20.73 |
| Solyc07g022860.2.1 | Tomato | nucleus | 23.53 | 20.33 |
| Os06t0687000-00 | Rice | mitochondrion | 30.67 | 20.03 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 29.62 | 19.78 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 29.62 | 19.72 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 29.62 | 19.72 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 28.57 | 19.18 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 29.2 | 18.89 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 31.09 | 18.85 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 26.26 | 18.66 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 28.15 | 18.43 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 27.94 | 18.32 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 25.84 | 18.28 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 27.73 | 18.18 |
| Zm00001d014521_P001 | Maize | mitochondrion | 28.57 | 17.64 |
| Solyc05g009550.2.1 | Tomato | mitochondrion | 15.55 | 17.33 |
| Solyc04g072560.2.1 | Tomato | nucleus, unclear | 18.49 | 16.67 |
| Solyc02g083130.2.1 | Tomato | plastid | 18.49 | 16.21 |
| Solyc07g054230.2.1 | Tomato | nucleus | 8.61 | 9.13 |
| Zm00001d036913_P001 | Maize | cytosol | 10.92 | 8.51 |
| Solyc07g032230.2.1 | Tomato | nucleus | 18.91 | 8.39 |
| Zm00001d051744_P001 | Maize | nucleus | 6.09 | 5.78 |
Protein Annotations
| EnsemblPlants:Solyc03g120120.2.1 | EnsemblPlantsGene:Solyc03g120120.2 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | SEG:seg | UniParc:UPI0002766B80 |
| UniProt:K4BMG1 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:68610753..68613813
Molecular Weight (calculated)
55184.0 Da
IEP (calculated)
9.238
GRAVY (calculated)
-1.058
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDAWLKSKF YAKSKSTVKL TKTRIEMVKR KRNAMLKYLK NDIADLLKTG LDVNAYSRAE GLLVEMNLSR CYDFLEQYCE HILNNLSVMY KQRECPEECR
101: EAVASLIFAA ARFADVPELR ELRSLFTERY GNFLECHVNK EFHQNLKSVP PTMEMKIQLM KDIASESGIE WNAKALEQKL YNPLVSEQDS SKSQNDHQYN
201: LPRKMEESPR KKDSEVAKFD RENARQLSKD KLEHNSSYGR KVVPDDEHSS SRRRSERSNR RRRDSLSRNS DDLPPVKDIE VIERQQNKPE IEIAPEEESD
301: DKKPLHYRSI LPPYIKPSLT KTTSDTVSPT SSTGEENCKD DAAEKAQDKP RSARTRGGTK VTTADDKETQ DEEDKLIDRL LIYLSRKKYQ KSVYTPKEAA
401: VDSPSKVSRW RSMGNRALSL PAEREQTSPR DQRRGHTRTN SFQPDMLGSN RHVHPKLPDY DDFVARLASL REQSRE
101: EAVASLIFAA ARFADVPELR ELRSLFTERY GNFLECHVNK EFHQNLKSVP PTMEMKIQLM KDIASESGIE WNAKALEQKL YNPLVSEQDS SKSQNDHQYN
201: LPRKMEESPR KKDSEVAKFD RENARQLSKD KLEHNSSYGR KVVPDDEHSS SRRRSERSNR RRRDSLSRNS DDLPPVKDIE VIERQQNKPE IEIAPEEESD
301: DKKPLHYRSI LPPYIKPSLT KTTSDTVSPT SSTGEENCKD DAAEKAQDKP RSARTRGGTK VTTADDKETQ DEEDKLIDRL LIYLSRKKYQ KSVYTPKEAA
401: VDSPSKVSRW RSMGNRALSL PAEREQTSPR DQRRGHTRTN SFQPDMLGSN RHVHPKLPDY DDFVARLASL REQSRE
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.