Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007888_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | Zm00001d007888_P002 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036913_P001 | Maize | cytosol | 94.22 | 77.41 |
| Zm00001d014521_P001 | Maize | mitochondrion | 94.02 | 61.22 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 81.47 | 52.1 |
| Os06t0687000-00 | Rice | mitochondrion | 41.83 | 28.81 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 36.65 | 25.95 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 37.25 | 25.76 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 35.46 | 24.48 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 34.86 | 24.1 |
| Zm00001d053852_P001 | Maize | nucleus | 23.71 | 17.37 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 14.34 | 10.7 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 9.16 | 9.18 |
| Solyc07g022860.2.1 | Tomato | nucleus | 9.36 | 8.53 |
| PGSC0003DMT400022180 | Potato | nucleus | 9.36 | 8.51 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 11.35 | 8.51 |
| PGSC0003DMT400092826 | Potato | nucleus | 7.17 | 8.47 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 2.79 | 8.09 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 7.37 | 8.08 |
| AT1G79910.1 | Thale cress | nucleus | 5.98 | 7.87 |
| Bra008502.1-P | Field mustard | nucleus | 5.78 | 7.65 |
| KRH23458 | Soybean | mitochondrion | 5.98 | 7.52 |
| CDY37561 | Canola | nucleus | 5.58 | 7.43 |
| CDY41108 | Canola | nucleus | 5.58 | 7.41 |
| Solyc12g043150.1.1 | Tomato | nucleus | 6.97 | 6.86 |
| KRH44367 | Soybean | mitochondrion | 4.18 | 6.52 |
| PGSC0003DMT400014529 | Potato | nucleus | 5.78 | 6.44 |
| Solyc03g120120.2.1 | Tomato | nucleus | 5.78 | 6.09 |
| KRH60286 | Soybean | nucleus | 9.16 | 6.01 |
| CDX87282 | Canola | cytosol | 2.39 | 5.94 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 4.18 | 5.9 |
| CDY49898 | Canola | mitochondrion | 3.19 | 5.84 |
| KRG89505 | Soybean | mitochondrion | 2.19 | 5.82 |
| AT1G52315.1 | Thale cress | mitochondrion | 3.98 | 5.76 |
| CDX75238 | Canola | nucleus | 7.17 | 5.71 |
| CDX68838 | Canola | nucleus | 6.97 | 5.56 |
| KRH41578 | Soybean | nucleus | 8.76 | 5.51 |
| AT4G32350.1 | Thale cress | nucleus | 7.77 | 5.33 |
| KRH47048 | Soybean | mitochondrion | 3.98 | 5.24 |
| CDX87900 | Canola | mitochondrion | 2.99 | 5.21 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 1.79 | 5.03 |
| KRH39280 | Soybean | mitochondrion, nucleus | 7.17 | 4.9 |
| CDY52976 | Canola | mitochondrion | 2.99 | 4.85 |
| KRH48400 | Soybean | mitochondrion, nucleus | 6.97 | 4.76 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 6.77 | 4.68 |
| PGSC0003DMT400042551 | Potato | nucleus | 2.59 | 4.21 |
| Zm00001d024425_P003 | Maize | cytosol | 4.18 | 3.7 |
| Solyc06g066690.2.1 | Tomato | nucleus | 2.19 | 3.56 |
| Zm00001d052541_P001 | Maize | extracellular | 1.0 | 3.47 |
| CDY49897 | Canola | nucleus | 1.79 | 3.36 |
| CDX87899 | Canola | nucleus | 1.79 | 3.26 |
| Bra030391.1-P | Field mustard | nucleus | 3.19 | 3.2 |
| Zm00001d043813_P001 | Maize | mitochondrion | 1.99 | 3.12 |
| Zm00001d049479_P003 | Maize | cytosol, mitochondrion, plastid | 3.39 | 3.11 |
| Zm00001d021453_P002 | Maize | plastid | 2.99 | 2.87 |
| Zm00001d028456_P001 | Maize | mitochondrion | 2.99 | 2.82 |
| Zm00001d047884_P001 | Maize | cytosol | 0.8 | 2.8 |
| Zm00001d028457_P001 | Maize | mitochondrion | 0.8 | 2.0 |
| Zm00001d011684_P002 | Maize | nucleus, plastid | 3.98 | 1.65 |
| Zm00001d047887_P001 | Maize | mitochondrion | 0.8 | 1.61 |
| Zm00001d047885_P001 | Maize | mitochondrion | 0.8 | 1.6 |
| Zm00001d047886_P001 | Maize | mitochondrion | 0.8 | 1.6 |
| Zm00001d034058_P004 | Maize | mitochondrion | 0.6 | 1.58 |
| Zm00001d034057_P001 | Maize | mitochondrion | 0.6 | 1.31 |
| Zm00001d033714_P001 | Maize | mitochondrion | 0.8 | 1.14 |
| Zm00001d028142_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d048482_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 0.0 | 0.0 |
| KRH06586 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d051744_P001 | EnsemblPlants:Zm00001d051744_T001 | EnsemblPlantsGene:Zm00001d051744 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF40 | ProteinID:AQK55057.1 | UniParc:UPI0008458833 | UniProt:A0A1D6Q9L0 |
| MapMan:35.2 | : | : | : | : | : |
Description
Regulator of Vps4 activity in the MVB pathway protein
Coordinates
chr4:-:168626712..168628426
Molecular Weight (calculated)
56351.1 Da
IEP (calculated)
8.060
GRAVY (calculated)
-1.036
Length
502 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSVAEELSV SFDAKELELK LWASLQTEHD MLEKGSRKPA ELAMPSSSKQ ICVENASCEE QEDILEKSLT KPTEPAMSLF DKTKYNGDAP CERKNKDMLE
101: NYSTKLIELA TDSSNNQKVT ENVPCKRNYD AEPAHHTEKV EIQLIQKNIQ SVADAHHTID ENSRKQQPYV SDEKEHLQKP MSPVDTNRTQ KDVQKLNRRV
201: VRHLEKELME AVELDLNGLT KNGFGAVRFP EAEGNKTVQL NVKPNEAARD FHIEKENDEV LHCSRLHGGS EHNEGHADSG LRAQRLENQG HPVSPLSGNT
301: RKKAPYTKPN VVNIKNPTKK QANNGFLHDK PQHLADLGYP VQKGQGDPER ALTMLSPYVE PKSNMQPVND DPEKQTSNGY RKSNIPGQTD HLENKNVLRP
401: VSVRRRTAKL PAPVDAYVEC LTMRRSHSSR RNGAKDDQNR KCNGTDDVGS KTNAQITPSS QSKHIGRRNG ALNHKNNSGR LMQRMQPEAA ETAIDCGNLL
501: LT
101: NYSTKLIELA TDSSNNQKVT ENVPCKRNYD AEPAHHTEKV EIQLIQKNIQ SVADAHHTID ENSRKQQPYV SDEKEHLQKP MSPVDTNRTQ KDVQKLNRRV
201: VRHLEKELME AVELDLNGLT KNGFGAVRFP EAEGNKTVQL NVKPNEAARD FHIEKENDEV LHCSRLHGGS EHNEGHADSG LRAQRLENQG HPVSPLSGNT
301: RKKAPYTKPN VVNIKNPTKK QANNGFLHDK PQHLADLGYP VQKGQGDPER ALTMLSPYVE PKSNMQPVND DPEKQTSNGY RKSNIPGQTD HLENKNVLRP
401: VSVRRRTAKL PAPVDAYVEC LTMRRSHSSR RNGAKDDQNR KCNGTDDVGS KTNAQITPSS QSKHIGRRNG ALNHKNNSGR LMQRMQPEAA ETAIDCGNLL
501: LT
001: MYRGLNFSIN NIRKRSWVRL CNIPVNDYTK ETIKEIAACV GELLKVELDL EKSQAQDYVR VQVLFDVRNP LRNSKEVQVP IGEVVSVTFD YERIRKRCFF
101: CQIFTHDKFD CPSRQQGSLQ LPSASLKKCL PERVMVDQLI NPLVGMDFND TQADKNEKEI SGGVFKQKNV VVQAPMISPS RSPKFIMLPD ELKGYSHRHI
201: NHKCCKSLWG SPVLIILIWI SRRALTLLIK LVLQV
101: CQIFTHDKFD CPSRQQGSLQ LPSASLKKCL PERVMVDQLI NPLVGMDFND TQADKNEKEI SGGVFKQKNV VVQAPMISPS RSPKFIMLPD ELKGYSHRHI
201: NHKCCKSLWG SPVLIILIWI SRRALTLLIK LVLQV
Arabidopsis Description
Zinc knuckle protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BF81]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.