Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400022180 | Potato | nucleus | 92.74 | 92.57 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 35.39 | 26.86 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 7.99 | 24.58 |
| KRH39280 | Soybean | mitochondrion, nucleus | 32.12 | 24.08 |
| KRH48400 | Soybean | mitochondrion, nucleus | 31.94 | 23.95 |
| Solyc03g120120.2.1 | Tomato | nucleus | 20.33 | 23.53 |
| CDX75238 | Canola | nucleus | 26.13 | 22.82 |
| CDX68838 | Canola | nucleus | 25.95 | 22.7 |
| Solyc06g066690.2.1 | Tomato | nucleus | 12.34 | 22.01 |
| Solyc12g043150.1.1 | Tomato | nucleus | 19.78 | 21.37 |
| KRH60286 | Soybean | nucleus | 29.58 | 21.28 |
| AT4G32350.1 | Thale cress | nucleus | 28.13 | 21.17 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 17.24 | 20.74 |
| KRH41578 | Soybean | nucleus | 29.95 | 20.68 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 22.14 | 17.06 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 21.78 | 16.83 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 21.78 | 16.78 |
| Os06t0687000-00 | Rice | mitochondrion | 21.96 | 16.6 |
| Zm00001d053852_P001 | Maize | nucleus | 20.51 | 16.5 |
| EES04550 | Sorghum | nucleus | 20.33 | 16.4 |
| Os02t0159200-01 | Rice | nucleus | 19.78 | 16.15 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 21.23 | 15.9 |
| Zm00001d014521_P001 | Maize | mitochondrion | 22.14 | 15.82 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 19.96 | 15.51 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 20.33 | 15.43 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 18.69 | 15.3 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 20.15 | 15.29 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 20.15 | 15.27 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 21.6 | 15.16 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 17.6 | 14.48 |
| Solyc04g007230.2.1 | Tomato | mitochondrion | 7.99 | 13.62 |
| Solyc02g085830.2.1 | Tomato | mitochondrion | 4.9 | 12.98 |
| Solyc12g010700.1.1 | Tomato | cytosol | 9.62 | 11.7 |
| Solyc07g054230.2.1 | Tomato | nucleus | 9.26 | 11.36 |
| Solyc02g083130.2.1 | Tomato | plastid | 10.53 | 10.68 |
| Solyc05g009550.2.1 | Tomato | mitochondrion | 7.99 | 10.3 |
| Zm00001d036913_P001 | Maize | cytosol | 10.89 | 9.82 |
| Solyc04g072560.2.1 | Tomato | nucleus, unclear | 9.07 | 9.47 |
| Zm00001d051744_P001 | Maize | nucleus | 8.53 | 9.36 |
| Solyc07g032230.2.1 | Tomato | nucleus | 9.98 | 5.13 |
| KRH06586 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc07g022860.2.1 | EnsemblPlantsGene:Solyc07g022860.2 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF29 | PFAM:PF03398 | SEG:seg | UniParc:UPI000276ABE0 |
| UniProt:K4CD43 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:23025719..23027896
Molecular Weight (calculated)
62571.2 Da
IEP (calculated)
10.177
GRAVY (calculated)
-1.097
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MFAAARFSDL PELRELRDLF QERYGNSLEC FVNQKFVEKL SSSPPAVEKR IQLLQDIVVE FSIRWDSMGF QKRMAFAQAQ PNRSGLSHAS AGNHILPNGK
101: DGGLKADKLD VALGERHKGL NDQHNIKNGR EGAVLKKEQQ DLHSSEGKES NKDRNKHLTK QETCYSVGRK HDILFDEEEQ TRIRNKAVME KDDNSTRIAK
201: SGNSSHGERR EGFDYKFTRN NENHGQILTG RVQDTLSCAR SETAPSRGLP FRNEDVTSAR DTAIEKNTVN SKKMVQQDAG NRLMTSYAKF ALPPPYSKSK
301: EKAIHPPYVK RKDSKERGLK GSKQSASEFD GHFRSSSPST RVETIKITKE SDLSDHVAQT IKPTRTNSHG HDKEFSHKDV ILPKPRSLRR KHHKSATNNH
401: GEVDKSEDAR GAKRSSSSRR REHSRKGLQI LFEDERHRKD EEERMIDKLL LHYSKRPSKY DVRKMPQALA TPDTGEFSNN QTNGDQDKME SDVVVFPKRS
501: ISLPHEQASP SKATPIFARA NSFQPDNQAC HVHPKLPDYD DLTARFASLR G
101: DGGLKADKLD VALGERHKGL NDQHNIKNGR EGAVLKKEQQ DLHSSEGKES NKDRNKHLTK QETCYSVGRK HDILFDEEEQ TRIRNKAVME KDDNSTRIAK
201: SGNSSHGERR EGFDYKFTRN NENHGQILTG RVQDTLSCAR SETAPSRGLP FRNEDVTSAR DTAIEKNTVN SKKMVQQDAG NRLMTSYAKF ALPPPYSKSK
301: EKAIHPPYVK RKDSKERGLK GSKQSASEFD GHFRSSSPST RVETIKITKE SDLSDHVAQT IKPTRTNSHG HDKEFSHKDV ILPKPRSLRR KHHKSATNNH
401: GEVDKSEDAR GAKRSSSSRR REHSRKGLQI LFEDERHRKD EEERMIDKLL LHYSKRPSKY DVRKMPQALA TPDTGEFSNN QTNGDQDKME SDVVVFPKRS
501: ISLPHEQASP SKATPIFARA NSFQPDNQAC HVHPKLPDYD DLTARFASLR G
001: MQKTPECPED CREAISSLMF AASGFSELPE LRELRQMFHE KYTDSLALFV NQELVENMSS KPFSMEKKVK LMEDVALEFS IRWDSKDFEK RIVRQNSISV
101: METPKSTNDK YKPVDRNMAL PKREEFEGSE NGVSLNRKTA EASERRDPLF QSDKESYQNG LRGNQRGLTY KERSENVLHA SRSESKDNKA ERKEFYLHSK
201: QNPAREKHQP IFNEGDTIVM KVNYGNLGQG NGHRPGVVDA HKKTEFVASE RKEFYSQSKQ EPSRERHQPI FNDGDTIVMK VKHENHVQGN GHKNGVVDLH
301: KKIEVNASEK LKSSSSKRAD KLVIGFKQES FFQGYKHEKN EEHAHQKVED STSRPPKPNS KSKRAESINP GSRHHNDRES KENAVLVGKS TEEDPSGDNV
401: KGGEYEYDHA NPARKVEERE TERMKSPFYK SLPPPYVKKS IAKARHEKAE ALDNPKARFD GEEGNHPDNG KNVYGAERRN GAGHHEVNDI DNASLKRQTN
501: RRKHIVESGG DDHISSRRRE NSRKGLQVLI DEDEKDSEEK MMDKLLMHYS KKPSSYEKDN VQEESKSRRT HLKKGESDEE MMIHQPARSR SLPAEQLAGP
601: SEPAKTFARA ASFQPERSSE AKHVHPKLPN YDDLAARFAE LKGR
101: METPKSTNDK YKPVDRNMAL PKREEFEGSE NGVSLNRKTA EASERRDPLF QSDKESYQNG LRGNQRGLTY KERSENVLHA SRSESKDNKA ERKEFYLHSK
201: QNPAREKHQP IFNEGDTIVM KVNYGNLGQG NGHRPGVVDA HKKTEFVASE RKEFYSQSKQ EPSRERHQPI FNDGDTIVMK VKHENHVQGN GHKNGVVDLH
301: KKIEVNASEK LKSSSSKRAD KLVIGFKQES FFQGYKHEKN EEHAHQKVED STSRPPKPNS KSKRAESINP GSRHHNDRES KENAVLVGKS TEEDPSGDNV
401: KGGEYEYDHA NPARKVEERE TERMKSPFYK SLPPPYVKKS IAKARHEKAE ALDNPKARFD GEEGNHPDNG KNVYGAERRN GAGHHEVNDI DNASLKRQTN
501: RRKHIVESGG DDHISSRRRE NSRKGLQVLI DEDEKDSEEK MMDKLLMHYS KKPSSYEKDN VQEESKSRRT HLKKGESDEE MMIHQPARSR SLPAEQLAGP
601: SEPAKTFARA ASFQPERSSE AKHVHPKLPN YDDLAARFAE LKGR
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.