Factsheet for Solyc12g010700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020212	Potato	cytosol	72.85	83.54
VIT_12s0059g01700.t01	Wine grape	golgi	28.48	55.36
CDX78503	Canola	mitochondrion	27.81	35.8
Bra006177.1-P	Field mustard	mitochondrion	27.15	34.94
AT2G14830.1	Thale cress	mitochondrion	29.36	34.64
CDY22873	Canola	mitochondrion	26.49	33.52
CDX70491	Canola	mitochondrion	27.59	32.98
CDY33850	Canola	mitochondrion	26.05	32.51
KRH70127	Soybean	mitochondrion, nucleus	23.84	28.42
Solyc07g054230.2.1	Tomato	nucleus	26.05	26.28
KRH26928	Soybean	nucleus	38.41	26.24
KRH22410	Soybean	mitochondrion, nucleus	37.75	25.68
Solyc06g066690.2.1	Tomato	nucleus	17.22	25.24
Solyc02g085830.2.1	Tomato	mitochondrion	10.15	22.12
Solyc04g007230.2.1	Tomato	mitochondrion	14.57	20.43
Solyc03g120120.2.1	Tomato	nucleus	20.75	19.75
Solyc12g043150.1.1	Tomato	nucleus	18.76	16.67
Solyc05g009550.2.1	Tomato	mitochondrion	15.23	16.16
Solyc04g072560.2.1	Tomato	nucleus, unclear	17.88	15.34
Solyc02g083130.2.1	Tomato	plastid	17.66	14.73
AT1G51900.1	Thale cress	mitochondrion	23.4	13.7
Solyc07g022860.2.1	Tomato	nucleus	11.7	9.62
Solyc07g032230.2.1	Tomato	nucleus	19.65	8.29

Protein Annotations

EnsemblPlants:Solyc12g010700.1.1	EnsemblPlantsGene:Solyc12g010700.1	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF18	PFAM:PF03398	SEG:seg	UniParc:UPI0002769FE4
UniProt:K4DCF7	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr12:-:3630935..3632819

Molecular Weight (calculated)

52367.3 Da

IEP (calculated)

9.101

GRAVY (calculated)

-0.439

Length

453 amino acids

Sequence
(BLAST)

001: MFDVIFGWRK ATKCKNLIKR VKCRLKLLKN KRSCIVKQLK DDLGQLLRHG HYQIVFDRVD QLFMDDNMLV VYDLLENFCE FILINLPYIR RHKDCPNDIN
101: EAVSSLVFAS TRLGNLPELP TIRKLFVQRY GKKFETSALE LLPGNLVNHQ IKQNLCIKSV SNEVKYKLVD EIARICFQKG PLLLEYRNES QHQQQVIGNK
201: RREMRLKNSN IATEAHIVSI DCSSATDETS TDYLSAIEQT SIGSVHCLRN NEQERISNPV RCSDYSSQCT ISSPKLVMKR EFWRTNGFIS GQTTDQLAYK
301: DDVEEFESIL SKDLNFQDQR LFMFRGPLFP LMLKMDTDHI NVSISPLKKT RLIAMKDASF MTDDLEGCSF TFSSSAPAIT RGQLYTRTRT MPVERPNDNL
401: ADNFLRSNSF PVIHKPSEES SLKSYVHPKL PDYDEIAAMF KALKKEKLQK KKC

Best Arabidopsis Sequence Match ( AT2G14830.1 )
(BLAST)

001: MFCFLFGWRR TSKCKSVVKQ LQCRLNLLKN KKYAISSHLR NDIAQLLRIG ERDRALHRAQ QLFLDENLMS LYHLLLHFSD IILLNLSYIR RRRDLPDGIN
101: EAVSTLVFAS ARCGDLPELR ALRVLFGKRY GNHFVDTALN LLPGNCVNPQ VIEKLSIISV SDDAKSKLLG EIVEEYNLRL EVLAIEYTPE FHKQVLKSEK
201: AEEEKEVMSS NSAQPYCSSQ KAESEAEVYK FTLTDADIEE NQEQERKVCD EEDDCIEEEV VEEDQSVFRF RESTEDERKE RKRLRRKPRS TSSSSSPIAK
301: DVDCWRYYYK GKRSRQRKEC GKCCYHIVYN VFTMLPDQKE SEEGERSFKK AMHVHPKLPD YDQIVAHFTA LRKQQQQKQK HMRS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:TAIR;Acc:AT2G14830]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.