Factsheet for Solyc04g072560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070850	Potato	cytosol	96.97	96.97
VIT_18s0164g00040.t01	Wine grape	nucleus	60.04	58.81
KRH08570	Soybean	nucleus	58.52	58.52
KRH70215	Soybean	nucleus	58.14	57.17
GSMUA_Achr5P23420_001	Banana	mitochondrion	47.92	51.63
Bra036745.1-P	Field mustard	nucleus	52.84	49.29
CDY46461	Canola	cytosol, mitochondrion, nucleus	52.84	49.29
TraesCS3B01G498800.1	Wheat	cytosol	47.54	49.12
HORVU3Hr1G098720.3	Barley	cytosol	47.35	48.73
KXG24567	Sorghum	cytosol, plastid	47.54	48.64
TraesCS3A01G459100.1	Wheat	cytosol, plastid	47.35	48.64
TraesCS3D01G451700.1	Wheat	cytosol	46.97	48.44
CDX91784	Canola	nucleus	53.03	48.28
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	47.92	46.34
GSMUA_Achr6P02830_001	Banana	cytosol	51.33	46.09
KRH35011	Soybean	mitochondrion	33.9	46.02
Os08t0175200-01	Rice	nucleus	48.3	45.45
AT1G34220.1	Thale cress	nucleus	55.11	44.84
Zm00001d024425_P003	Maize	cytosol	47.54	44.27
Solyc04g007230.2.1	Tomato	mitochondrion	26.7	43.65
CDY48635	Canola	cytosol	26.52	41.79
Solyc02g083130.2.1	Tomato	plastid	30.3	29.47
Solyc02g085830.2.1	Tomato	mitochondrion	11.36	28.85
Solyc05g009550.2.1	Tomato	mitochondrion	19.13	23.65
Solyc06g066690.2.1	Tomato	nucleus	13.45	22.98
Solyc03g120120.2.1	Tomato	nucleus	16.67	18.49
Solyc12g010700.1.1	Tomato	cytosol	15.34	17.88
Solyc07g032230.2.1	Tomato	nucleus	32.95	16.22
Solyc12g043150.1.1	Tomato	nucleus	14.96	15.49
Solyc07g022860.2.1	Tomato	nucleus	9.47	9.07
Solyc07g054230.2.1	Tomato	nucleus	3.98	4.68

Protein Annotations

EnsemblPlants:Solyc04g072560.2.1	EnsemblPlantsGene:Solyc04g072560.2	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5	PFAM:PF03398	SEG:seg
UniParc:UPI0002766FBB	UniProt:K4BTP3	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4:+:59538077..59543381

Molecular Weight (calculated)

58512.9 Da

IEP (calculated)

4.807

GRAVY (calculated)

-0.570

Length

528 amino acids

Sequence
(BLAST)

001: MDSFFSKGFK AAKCKTMLKL TIPRIKLLRN RREFQLKQMR KEIAKLLETG QEATARIRVE HIIREEKMMA AQEIVELFCE LISVRLPIIE AQRECPLDLK
101: EAISSVCFAA PRCADLPELL QVQLMFAGKY GKEFITAATE LMPECGVNRQ LIELLSIRAP APDVKMKLLK EIAEEHQLDW DPSASETELL KSHEDLLNGP
201: TQFVSGAKVP LPKERFDEVQ HSASDQVFDK QTESEADFDL DFPEVPKQPL RPSTGGVSAP EMLPFPASAL SDSDEEVGKP SEDGELKSHK QDVERDELLQ
301: EKVVSKDFGS ADSVSAPEEE KQFLPFMVPP PKSSPLPSTE STTIQSTQPP SATKTKVETD VDLQDVLAAA QAAADSAERA AAAARSAASL AQVRISELTR
401: KRSEEVPVSP SENPFYSEKQ ESHILEKPNL DLQHQSSNSD GIPSPLHGSP LEHQVSNIPS YDDSTVGVES PISHIHHPGQ GLHQPQRLPS MDDETYYSYP
501: NLFNATNGSN PSSRSQSFKD NIRSSHDK

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.