Factsheet for TraesCS3B01G498800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G451700.1	Wheat	cytosol	98.63	98.44
TraesCS3A01G459100.1	Wheat	cytosol, plastid	96.48	95.91
HORVU3Hr1G098720.3	Barley	cytosol	95.3	94.93
KXG24567	Sorghum	cytosol, plastid	79.45	78.68
Os08t0175200-01	Rice	nucleus	78.86	71.84
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	75.15	70.33
Zm00001d024425_P003	Maize	cytosol	77.3	69.66
GSMUA_Achr5P23420_001	Banana	mitochondrion	50.1	52.24
VIT_18s0164g00040.t01	Wine grape	nucleus	51.47	48.79
GSMUA_Achr6P02830_001	Banana	cytosol	55.77	48.47
PGSC0003DMT400070850	Potato	cytosol	49.32	47.73
Solyc04g072560.2.1	Tomato	nucleus, unclear	49.12	47.54
TraesCS3B01G296700.1	Wheat	mitochondrion, plastid	29.55	47.34
KRH08570	Soybean	nucleus	48.34	46.78
KRH70215	Soybean	nucleus	48.53	46.18
KRH35011	Soybean	mitochondrion	33.27	43.7
CDY48635	Canola	cytosol	26.81	40.9
CDY46461	Canola	cytosol, mitochondrion, nucleus	45.01	40.64
Bra036745.1-P	Field mustard	nucleus	45.01	40.64
CDX91784	Canola	nucleus	45.4	40.0
AT1G34220.1	Thale cress	nucleus	46.97	36.98
TraesCS4B01G219300.1	Wheat	mitochondrion	11.94	33.15
TraesCS5B01G347800.1	Wheat	mitochondrion	30.53	32.23
TraesCS4B01G045100.1	Wheat	mitochondrion	17.42	25.21
TraesCS4B01G219400.1	Wheat	mitochondrion	12.92	25.0
TraesCS4B01G044800.1	Wheat	mitochondrion	16.44	25.0
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	16.44	15.5
TraesCS3B01G284600.1	Wheat	nucleus	32.29	14.85
TraesCS3B01G288900.2	Wheat	plastid	32.09	14.24
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	14.87	10.66
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	13.7	9.63

Protein Annotations

EnsemblPlants:TraesCS3B01G498800.1	EnsemblPlantsGene:TraesCS3B01G498800	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5	PFAM:PF03398	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:742170489..742173343

Molecular Weight (calculated)

56275.3 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.515

Length

511 amino acids

Sequence
(BLAST)

001: MSMLEAFFGK GGGGGGGGFR AAKCKTLLKL SIPRIKLLRN RRELQLRQMR RDIAKLLEAG QEATARIRVE HIIREENMMA AQEILELFCE LVAVRLPIIE
101: AQKECPIDLK EAISSICFAA PRCSDLPELM QVQMMFATKY GKEFVAAAAE LMPDCGVNRQ IIELLSIRPP PVDIKMKLLK EIAEEHEIDW DPSETETEYL
201: KPHEDLLNGP TYFSGSTLPL PKEKHEEPVA ATAADEPGED YQSDGGFDSL DLPEVPKAAI RPASGTQSTP DIGPHVQSSQ SAAHDFSNPP DLEENPTADA
301: AFYNYLKSSE PPVSPQFAQP RMPALPDEKK QFVPFVSPPP FASASSMERS DSIPLNSPPV KPTEQEFFTR SVDEVTAPQT PKDFNMFSKR PEQVHSISPI
401: ESGENIDMDG VVSAAQTAAD SAERAASAAR AAANLAKLCI ADLKKNTRVY ESHSDGSQKE SHHQTEQKPV FDHQDSFSND LEGYAPSHVP QRSTSLEDDP
501: FSYPNLFSSK P

Best Arabidopsis Sequence Match ( AT1G34220.1 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKTESLIFI AWFSLVETRD LFMFLYFSNS ILQLVELLSV RAPSPETKLK
201: LLKEIAEEHE LDWDPASTET DLFKSHEDLL DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS
301: ASYEHTSHDL PFDSENAGVE KTASKRDEHP AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS
401: AERAASAARS AASLAQLRIN ELTRKTSDQY PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS
501: FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS
601: PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.