Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G255800.1 | |
| TraesCS2D01G266900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | TraesCS2A01G255800.1 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | TraesCS2D01G266900.1 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 93.26 | 95.63 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 91.47 | 91.6 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 90.78 | 90.91 |
| Os06t0687000-00 | Rice | mitochondrion | 57.91 | 57.75 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 12.93 | 52.51 |
| KRH06586 | Soybean | cytosol | 4.4 | 52.46 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 54.06 | 50.06 |
| Zm00001d014521_P001 | Maize | mitochondrion | 51.99 | 49.03 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 44.02 | 44.88 |
| KRG89505 | Soybean | mitochondrion | 10.87 | 41.8 |
| CDX87282 | Canola | cytosol | 10.45 | 37.62 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 23.52 | 37.34 |
| Zm00001d051744_P001 | Maize | nucleus | 24.48 | 35.46 |
| Zm00001d036913_P001 | Maize | cytosol | 28.2 | 33.55 |
| PGSC0003DMT400042551 | Potato | nucleus | 14.17 | 33.33 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 22.56 | 32.73 |
| KRH44367 | Soybean | mitochondrion | 14.44 | 32.61 |
| Solyc06g066690.2.1 | Tomato | nucleus | 13.76 | 32.36 |
| CDY52976 | Canola | mitochondrion | 13.62 | 32.04 |
| KRH47048 | Soybean | mitochondrion | 16.64 | 31.68 |
| CDX87899 | Canola | nucleus | 11.97 | 31.52 |
| CDY37561 | Canola | nucleus | 16.23 | 31.3 |
| Bra008502.1-P | Field mustard | nucleus | 16.23 | 31.13 |
| CDY41108 | Canola | nucleus | 15.96 | 30.69 |
| CDY49898 | Canola | mitochondrion | 11.55 | 30.66 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 28.2 | 30.46 |
| KRH23458 | Soybean | mitochondrion | 16.64 | 30.33 |
| AT1G79910.1 | Thale cress | nucleus | 15.68 | 29.92 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 7.02 | 29.48 |
| CDY49897 | Canola | nucleus | 10.87 | 29.48 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 27.1 | 29.4 |
| CDX87900 | Canola | mitochondrion | 11.55 | 29.17 |
| AT1G52315.1 | Thale cress | mitochondrion | 13.48 | 28.24 |
| Solyc03g120120.2.1 | Tomato | nucleus | 18.43 | 28.15 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 13.76 | 28.09 |
| PGSC0003DMT400014529 | Potato | nucleus | 17.19 | 27.78 |
| Solyc12g043150.1.1 | Tomato | nucleus | 18.71 | 26.67 |
| TraesCS4B01G219300.1 | Wheat | mitochondrion | 6.74 | 26.63 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 24.21 | 24.24 |
| CDX68838 | Canola | nucleus | 20.77 | 23.97 |
| CDX75238 | Canola | nucleus | 20.63 | 23.77 |
| PGSC0003DMT400092826 | Potato | nucleus | 13.76 | 23.53 |
| KRH39280 | Soybean | mitochondrion, nucleus | 23.52 | 23.27 |
| KRH48400 | Soybean | mitochondrion, nucleus | 23.25 | 22.99 |
| KRH60286 | Soybean | nucleus | 22.28 | 21.15 |
| AT4G32350.1 | Thale cress | nucleus | 20.63 | 20.49 |
| KRH41578 | Soybean | nucleus | 22.28 | 20.3 |
| PGSC0003DMT400022180 | Potato | nucleus | 15.41 | 20.29 |
| Solyc07g022860.2.1 | Tomato | nucleus | 15.27 | 20.15 |
| TraesCS3B01G296700.1 | Wheat | mitochondrion, plastid | 8.67 | 19.75 |
| TraesCS4B01G219400.1 | Wheat | mitochondrion | 6.74 | 18.56 |
| Bra030391.1-P | Field mustard | nucleus | 11.28 | 16.4 |
| TraesCS4B01G044800.1 | Wheat | mitochondrion | 7.15 | 15.48 |
| TraesCS5B01G347800.1 | Wheat | mitochondrion | 10.04 | 15.08 |
| TraesCS4B01G045100.1 | Wheat | mitochondrion | 7.29 | 15.01 |
| TraesCS3B01G498800.1 | Wheat | cytosol | 9.63 | 13.7 |
| TraesCS4B01G219200.1 | Wheat | mitochondrion, plastid | 9.49 | 12.73 |
| TraesCS3B01G284600.1 | Wheat | nucleus | 12.24 | 8.01 |
| TraesCS3B01G288900.2 | Wheat | plastid | 12.1 | 7.64 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G345200.1 | EnsemblPlantsGene:TraesCS7B01G345200 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | ncoils:Coil | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF40 | PFAM:PF03398 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:600989088..600993434
Molecular Weight (calculated)
81130.6 Da
IEP (calculated)
8.306
GRAVY (calculated)
-0.950
Length
727 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDGLINSKF YNRCKHAFKC TRTRLVVIRR KKQAMIGFLK KDVADLLANG LDIHAFGRMD ALIMEMNHAS CYDMIEQYCD FLGKQLNSLQ KQRDCPQEAM
101: EAVSTLIFAT ARFPDLPELC DLRHIFTERY GGSLEPFVSL EFIRKLESEL FTDEEKFQVM QSVAEESSVG FDMRALEIKL WAARESEDDL LEKDSMEKGE
201: LAVPLPIQQN DDGRLNDNTG RKNSDKSHGK EQLEKSVSPL DLKRENAQKD DNTRRWHADK ADGKEHLEKS VSPLQTEREE AQRRVQKLKK KDARPSEKEL
301: MEAVELDING LPKQGSGSVK FPETESNRIV PPIVKPKETK KEHGVEKENN RGLGYHHRSP IPGRPDYTRR HANLGCKALG LQNQGPTSLN ASSGKTTNRP
401: PPISNPNGAK GRDCDEKEEG NSCLRGRPQH LEDLRHTVQN GQRAPHKVAN VQPPYVKPKL GMQPVKDDPA RPIDSNCNMS ERTDRLADKD VLRPVSVRRR
501: PAAPAFDEAP NGEKVTSQKG NSHMIQPSKH KGASATDGYD RKGNGVGNGR NVERTPSGRP SHSGMRNGVL YDDDYDGSMQ QPKAGEAETA IDFGNLLPRA
601: ANGHHRLNSR NTDVHGGDPD EEERMMDKLL MHYSKKGSGT DETKTTVETS RTANCHGAQT HYQQNGSVHT PGRAVSLPPE SMSPGEAAKV PARSTSMRSD
701: CPGGVRVHPK MPDFEELAAR VMALRNA
101: EAVSTLIFAT ARFPDLPELC DLRHIFTERY GGSLEPFVSL EFIRKLESEL FTDEEKFQVM QSVAEESSVG FDMRALEIKL WAARESEDDL LEKDSMEKGE
201: LAVPLPIQQN DDGRLNDNTG RKNSDKSHGK EQLEKSVSPL DLKRENAQKD DNTRRWHADK ADGKEHLEKS VSPLQTEREE AQRRVQKLKK KDARPSEKEL
301: MEAVELDING LPKQGSGSVK FPETESNRIV PPIVKPKETK KEHGVEKENN RGLGYHHRSP IPGRPDYTRR HANLGCKALG LQNQGPTSLN ASSGKTTNRP
401: PPISNPNGAK GRDCDEKEEG NSCLRGRPQH LEDLRHTVQN GQRAPHKVAN VQPPYVKPKL GMQPVKDDPA RPIDSNCNMS ERTDRLADKD VLRPVSVRRR
501: PAAPAFDEAP NGEKVTSQKG NSHMIQPSKH KGASATDGYD RKGNGVGNGR NVERTPSGRP SHSGMRNGVL YDDDYDGSMQ QPKAGEAETA IDFGNLLPRA
601: ANGHHRLNSR NTDVHGGDPD EEERMMDKLL MHYSKKGSGT DETKTTVETS RTANCHGAQT HYQQNGSVHT PGRAVSLPPE SMSPGEAAKV PARSTSMRSD
701: CPGGVRVHPK MPDFEELAAR VMALRNA
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.