Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49897 | Canola | nucleus | 80.07 | 82.46 |
| CDY52976 | Canola | mitochondrion | 55.8 | 49.84 |
| CDY49898 | Canola | mitochondrion | 46.38 | 46.72 |
| CDX87900 | Canola | mitochondrion | 47.83 | 45.83 |
| CDX87282 | Canola | cytosol | 26.45 | 36.14 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 22.46 | 34.64 |
| CDY04642 | Canola | cytosol | 14.13 | 26.0 |
| CDY37561 | Canola | nucleus | 34.06 | 24.93 |
| CDY41108 | Canola | nucleus | 34.06 | 24.87 |
| CDX93076 | Canola | mitochondrion | 18.48 | 21.07 |
| CDX98558 | Canola | plastid | 19.57 | 20.93 |
| CDX97673 | Canola | plastid | 19.2 | 20.54 |
| CDY20110 | Canola | nucleus | 17.75 | 20.5 |
| CDY15051 | Canola | cytosol | 13.04 | 20.34 |
| CDY21843 | Canola | nucleus | 17.03 | 19.18 |
| CDX78503 | Canola | mitochondrion | 23.91 | 18.75 |
| CDX70491 | Canola | mitochondrion | 24.28 | 17.68 |
| CDY58595 | Canola | mitochondrion | 20.65 | 17.65 |
| CDY53122 | Canola | mitochondrion | 20.65 | 17.65 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 28.62 | 17.25 |
| CDY22873 | Canola | mitochondrion | 22.1 | 17.04 |
| CDY33850 | Canola | mitochondrion | 21.74 | 16.53 |
| CDX75521 | Canola | plastid | 25.36 | 16.17 |
| CDY69937 | Canola | plastid | 24.28 | 16.14 |
| CDX69159 | Canola | plastid | 25.36 | 15.91 |
| CDY41639 | Canola | plastid | 24.64 | 15.81 |
| CDY21093 | Canola | mitochondrion | 21.38 | 14.94 |
| CDY50176 | Canola | mitochondrion | 20.65 | 14.47 |
| CDY19375 | Canola | mitochondrion | 21.38 | 14.46 |
| Os02t0159200-01 | Rice | nucleus | 34.06 | 13.93 |
| CDX68838 | Canola | nucleus | 31.52 | 13.81 |
| CDX75238 | Canola | nucleus | 31.52 | 13.79 |
| Zm00001d053852_P001 | Maize | nucleus | 34.06 | 13.72 |
| EES04550 | Sorghum | nucleus | 32.97 | 13.32 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 34.06 | 13.18 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 31.88 | 13.13 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 33.7 | 13.01 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 33.7 | 13.01 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 31.16 | 12.78 |
| Os06t0687000-00 | Rice | mitochondrion | 33.7 | 12.76 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 33.7 | 12.64 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 31.16 | 12.13 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 31.52 | 11.98 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 31.52 | 11.98 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 34.06 | 11.97 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 31.52 | 11.97 |
| CDY48635 | Canola | cytosol | 14.49 | 11.94 |
| Zm00001d014521_P001 | Maize | mitochondrion | 32.61 | 11.67 |
| CDY46461 | Canola | cytosol, mitochondrion, nucleus | 23.55 | 11.48 |
| CDX91784 | Canola | nucleus | 23.55 | 11.21 |
| CDY43502 | Canola | mitochondrion | 22.83 | 6.74 |
| CDY35879 | Canola | mitochondrion | 21.74 | 6.54 |
| CDX82713 | Canola | mitochondrion | 21.74 | 6.53 |
| Zm00001d036913_P001 | Maize | cytosol | 10.14 | 4.58 |
| Zm00001d051744_P001 | Maize | nucleus | 3.26 | 1.79 |
Protein Annotations
| EnsemblPlants:CDX87899 | EnsemblPlantsGene:GSBRNA2T00147142001 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | ProteinID:CDX87899 | ProteinID:CDX87899.1 |
| SEG:seg | UniParc:UPI0004EC3F83 | MapMan:35.2 | : | : | : |
Description
BnaC06g09610D
Coordinates
chrLK031852:+:1317415..1318574
Molecular Weight (calculated)
32211.8 Da
IEP (calculated)
10.098
GRAVY (calculated)
-0.732
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MICCYFKPKF YKKCKHLIKF IKIRLNIQRK KKNAMVSFLK TDIVEILKTG QEDDERAYKK VEEILEYRQI IASYDLIERF CNCISSNLTL MLKQRECPEE
101: CREAVYSLIY AAAWVRKVPE LKDLRALFTR RYGDPVDVNQ ELVEKLVWRK PSREVRVQTL QEIAQEAKIS WDSLSKGSLS SSSSSSSKRR ESVKKIFPYK
201: KQGAQNDEQG HDEKKEKSTV QEKSRLRGPQ GSASLTSTSS NEVSSTKDYK RKSLFQRPKI LDYDEVVARL ADLRRS
101: CREAVYSLIY AAAWVRKVPE LKDLRALFTR RYGDPVDVNQ ELVEKLVWRK PSREVRVQTL QEIAQEAKIS WDSLSKGSLS SSSSSSSKRR ESVKKIFPYK
201: KQGAQNDEQG HDEKKEKSTV QEKSRLRGPQ GSASLTSTSS NEVSSTKDYK RKSLFQRPKI LDYDEVVARL ADLRRS
001: MFLRCFKPKF YKKSKSTTSY MKIRIDIVRR KRIAMVRNYK TDIVNFLKNG QDSEAYRRAE LLLEELRIIS CYDLIERFCD CISENLSLML KKRECPEECR
101: EAVSSLIYAT AWVPDVPELK DLRAVFTKRF GNFIASSVNH ELVEKTELLR PPSRELKIQT VKDVANEFSI NWDPTPLKLM LLRETSALQI KDKVETRADY
201: LNKDTEKSFM DEHSDDESVL SESWRIDSLS KGSLSSSSSS SSSSLRRVSV RKKKGKKILP YGIISSPDTK LGAGNDEKAQ EEKEEKRKIA DQENSRLLGI
301: QGSRSLTSTS NNEVSTIREN ERMSSFQRPN LLDYDDVVAR LAALRRR
101: EAVSSLIYAT AWVPDVPELK DLRAVFTKRF GNFIASSVNH ELVEKTELLR PPSRELKIQT VKDVANEFSI NWDPTPLKLM LLRETSALQI KDKVETRADY
201: LNKDTEKSFM DEHSDDESVL SESWRIDSLS KGSLSSSSSS SSSSLRRVSV RKKKGKKILP YGIISSPDTK LGAGNDEKAQ EEKEEKRKIA DQENSRLLGI
301: QGSRSLTSTS NNEVSTIREN ERMSSFQRPN LLDYDDVVAR LAALRRR
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4ICV8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.