CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013184.1-P	Field mustard	mitochondrion	99.17	99.17
CDY15051	Canola	cytosol	52.89	72.32
CDY20110	Canola	nucleus	49.17	49.79
CDX98558	Canola	plastid	52.48	49.22
CDX97673	Canola	plastid	52.07	48.84
CDY21843	Canola	nucleus	48.35	47.76
AT3G15490.1	Thale cress	mitochondrion, nucleus	38.02	43.6
KRH26063	Soybean	cytosol	22.31	25.84
KRH55350	Soybean	extracellular	19.42	23.04
CDX87282	Canola	cytosol	18.59	22.28
CDY04642	Canola	cytosol	12.81	20.67
CDX87899	Canola	nucleus	21.07	18.48
CDY49897	Canola	nucleus	19.01	17.16
CDY49898	Canola	mitochondrion	17.36	15.33
CDY22873	Canola	mitochondrion	22.31	15.08
CDY33850	Canola	mitochondrion	21.9	14.6
CDY37561	Canola	nucleus	22.31	14.32
CDX87900	Canola	mitochondrion	16.94	14.24
CDX78503	Canola	mitochondrion	20.66	14.2
CDY41108	Canola	nucleus	21.9	14.02
CDY52976	Canola	mitochondrion	17.36	13.59
CDY53122	Canola	mitochondrion	17.77	13.31
CDY58595	Canola	mitochondrion	17.77	13.31
CDX70491	Canola	mitochondrion	20.25	12.93
CDY50176	Canola	mitochondrion	17.77	10.91
CDY21093	Canola	mitochondrion	17.36	10.63
CDX75521	Canola	plastid	18.59	10.39
CDX69159	Canola	plastid	18.59	10.23
CDY69937	Canola	plastid	17.36	10.12
CDY19375	Canola	mitochondrion	16.94	10.05
CDY41639	Canola	plastid	16.94	9.53
CDY48635	Canola	cytosol	12.4	8.96
CDY46461	Canola	cytosol, mitochondrion, nucleus	19.01	8.13
CDX91784	Canola	nucleus	19.42	8.1
CDX75238	Canola	nucleus	17.36	6.66
CDX68838	Canola	nucleus	16.94	6.51
CDY35879	Canola	mitochondrion	19.01	5.02
CDX82713	Canola	mitochondrion	19.01	5.01
CDY43502	Canola	mitochondrion	18.59	4.81

Protein Annotations

EnsemblPlants:CDX93076	EnsemblPlantsGene:GSBRNA2T00154985001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PFAM:PF03398	ProteinID:CDX93076	ProteinID:CDX93076.1	UniParc:UPI0004EDFEB2
MapMan:35.2	:	:	:	:	:

Description

BnaA03g37980D

Coordinates

chrLK031874:+:1067085..1068085

Molecular Weight (calculated)

28096.0 Da

IEP (calculated)

8.574

GRAVY (calculated)

-0.349

Length

242 amino acids

Sequence
(BLAST)

001: MICSSRWRKA SKCKLLIQTL LCSIDAHQRR KECMVRHAQS DINQLLLSNR VQETISKRKH ICEDKTRLAA YSQVQYFCSF ILQNFSDLKH QSDVHLLPEE
101: SKEAIAGLLF AASRIRELRE LKFIRSLFLE RFGLQFDRDS VDLRPGNLVS SEMIKIFVKK MPQDAMSPET IVETNIAAYV ESVTEDSVST DNLGFRDSDA
201: VKIRDIQNMD WEKEYEGEFK VSVCKSCRVS RKRSIIVHEI RV

Best Arabidopsis Sequence Match ( AT3G15490.1 )
(BLAST)

001: MVRQSRSDIA QLLSYGRYSE ALPKAKQFYE DERRLSAYDQ VELFCTTILQ NISSLKYENN VDLLPEETKK AMAGIIFAAS RIGELEDLQH IRSFFVQRFG
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q4PSP2]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.