CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97673	Canola	plastid	95.35	95.35
Bra027239.1-P	Field mustard	plastid	92.64	94.47
CDY20110	Canola	nucleus	60.47	65.27
AT3G15490.1	Thale cress	mitochondrion, nucleus	51.94	63.51
CDY21843	Canola	nucleus	59.69	62.86
CDX93076	Canola	mitochondrion	49.22	52.48
CDY15051	Canola	cytosol	34.11	49.72
KRH26063	Soybean	cytosol	22.48	27.75
KRH55350	Soybean	extracellular	20.16	25.49
CDY04642	Canola	cytosol	13.18	22.67
CDX87282	Canola	cytosol	16.67	21.29
CDX87899	Canola	nucleus	20.93	19.57
CDY22873	Canola	mitochondrion	26.74	19.27
CDY33850	Canola	mitochondrion	26.36	18.73
CDY49897	Canola	nucleus	18.99	18.28
CDX78503	Canola	mitochondrion	24.03	17.61
CDY49898	Canola	mitochondrion	17.83	16.79
CDX70491	Canola	mitochondrion	24.03	16.36
CDX87900	Canola	mitochondrion	17.44	15.62
CDY52976	Canola	mitochondrion	17.83	14.89
CDY41108	Canola	nucleus	19.77	13.49
CDY37561	Canola	nucleus	19.38	13.26
CDY53122	Canola	mitochondrion	16.28	13.0
CDY58595	Canola	mitochondrion	16.28	13.0
CDY50176	Canola	mitochondrion	19.38	12.69
CDY21093	Canola	mitochondrion	19.38	12.66
CDY69937	Canola	plastid	19.77	12.29
CDY19375	Canola	mitochondrion	19.38	12.25
CDX75521	Canola	plastid	20.16	12.01
CDX69159	Canola	plastid	20.16	11.82
CDY41639	Canola	plastid	19.38	11.63
CDY48635	Canola	cytosol	11.63	8.96
CDY46461	Canola	cytosol, mitochondrion, nucleus	19.38	8.83
CDX91784	Canola	nucleus	19.38	8.62
CDX75238	Canola	nucleus	18.99	7.77
CDX68838	Canola	nucleus	18.22	7.46
CDY35879	Canola	mitochondrion	19.38	5.45
CDX82713	Canola	mitochondrion	19.38	5.44
CDY43502	Canola	mitochondrion	18.22	5.03

Protein Annotations

EnsemblPlants:CDX98558	EnsemblPlantsGene:GSBRNA2T00106215001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF16	PFAM:PF03398	ProteinID:CDX98558	ProteinID:CDX98558.1
UniParc:UPI0004EB44F4	MapMan:35.2	:	:	:	:

Description

BnaC05g38170D

Coordinates

chrLK031905:+:1004502..1005603

Molecular Weight (calculated)

29692.8 Da

IEP (calculated)

8.950

GRAVY (calculated)

-0.436

Length

258 amino acids

Sequence
(BLAST)

001: MMFAKKTEQK FGCYCNVFAV WSRSSRWQKA SKCKLHIQNL LCSVKVQRAR TECMVRQSRS DIAQLVPYGR FREALPKAKQ FYEDERRLLA YDQVKYLCTS
101: ILQSFSPLLH QSDVHLLPDE MKEAMAGLIF AASRIGELKE LQIIRCLFVQ RFGQKFDKDC VDLRPGNLVS SEIVNILDTT MPQDAISPEI IMAISQKYQT
201: DFITSVDSIT EDSASLNNLG NADSDTLARR KKVTKENPKC LHTDRGESQE RDRSKFMR

Best Arabidopsis Sequence Match ( AT3G15490.1 )
(BLAST)

001: MVRQSRSDIA QLLSYGRYSE ALPKAKQFYE DERRLSAYDQ VELFCTTILQ NISSLKYENN VDLLPEETKK AMAGIIFAAS RIGELEDLQH IRSFFVQRFG
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q4PSP2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.