Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97673 | Canola | plastid | 64.93 | 53.1 |
| CDX98558 | Canola | plastid | 63.51 | 51.94 |
| Bra027239.1-P | Field mustard | plastid | 62.09 | 51.78 |
| CDY15051 | Canola | cytosol | 41.23 | 49.15 |
| CDY20110 | Canola | nucleus | 51.18 | 45.19 |
| Bra021112.1-P | Field mustard | nucleus | 51.18 | 45.19 |
| CDY21843 | Canola | nucleus | 51.18 | 44.08 |
| CDX93076 | Canola | mitochondrion | 43.6 | 38.02 |
| Bra013184.1-P | Field mustard | mitochondrion | 43.13 | 37.6 |
| KRH26063 | Soybean | cytosol | 23.22 | 23.45 |
| KRH55350 | Soybean | extracellular | 21.8 | 22.55 |
| AT2G14830.1 | Thale cress | mitochondrion | 26.07 | 14.32 |
| AT1G52315.1 | Thale cress | mitochondrion | 23.22 | 14.12 |
| AT1G25420.1 | Thale cress | mitochondrion | 18.48 | 12.07 |
| AT1G79910.1 | Thale cress | nucleus | 20.85 | 11.55 |
| AT1G13340.1 | Thale cress | mitochondrion | 21.33 | 11.0 |
| AT4G35730.1 | Thale cress | plastid | 23.22 | 10.52 |
| AT1G34220.1 | Thale cress | nucleus | 19.43 | 6.32 |
| AT4G32350.1 | Thale cress | nucleus | 19.91 | 5.74 |
| AT1G51900.1 | Thale cress | mitochondrion | 20.38 | 5.56 |
| AT2G19710.1 | Thale cress | mitochondrion, nucleus | 18.96 | 4.27 |
| AT4G29440.1 | Thale cress | mitochondrion | 17.06 | 3.3 |
Protein Annotations
| Gene3D:1.20.1260.60 | MapMan:35.2 | EntrezGene:820788 | UniProt:A0A178VB09 | ProteinID:AEE75682.1 | ArrayExpress:AT3G15490 |
| EnsemblPlantsGene:AT3G15490 | RefSeq:AT3G15490 | TAIR:AT3G15490 | RefSeq:AT3G15490-TAIR-G | EnsemblPlants:AT3G15490.1 | TAIR:AT3G15490.1 |
| Unigene:At.39042 | EMBL:DQ056594 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:Ist1 |
| RefSeq:NP_188168.2 | ProteinID:OAP02545.1 | PFAM:PF03398 | PO:PO:0020094 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF16 |
| UniProt:Q4PSP2 | UniParc:UPI000034EF3A | : | : | : | : |
Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q4PSP2]
Coordinates
chr3:+:5229124..5230646
Molecular Weight (calculated)
24420.2 Da
IEP (calculated)
9.325
GRAVY (calculated)
-0.598
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRQSRSDIA QLLSYGRYSE ALPKAKQFYE DERRLSAYDQ VELFCTTILQ NISSLKYENN VDLLPEETKK AMAGIIFAAS RIGELEDLQH IRSFFVQRFG
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.