Factsheet for Bra021112.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20110	Canola	nucleus	100.0	100.0
CDY21843	Canola	nucleus	95.4	93.06
Bra027239.1-P	Field mustard	plastid	64.44	60.87
AT3G15490.1	Thale cress	mitochondrion, nucleus	45.19	51.18
Bra013184.1-P	Field mustard	mitochondrion	49.37	48.76
KRH26063	Soybean	cytosol	25.52	29.19
KRH55350	Soybean	extracellular	24.27	28.43
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.23	19.65
Bra006177.1-P	Field mustard	mitochondrion	23.43	15.91
Bra012478.1-P	Field mustard	mitochondrion	19.25	14.24
Bra008502.1-P	Field mustard	nucleus	20.08	12.66
Bra018962.1-P	Field mustard	extracellular, vacuole	17.99	12.08
Bra011633.1-P	Field mustard	mitochondrion, plastid	21.76	11.95
Bra010522.1-P	Field mustard	plastid	20.5	11.64
Bra036745.1-P	Field mustard	nucleus	23.01	9.72
Bra019826.1-P	Field mustard	mitochondrion	20.08	9.72
Bra030391.1-P	Field mustard	nucleus	18.83	9.0
Bra016733.1-P	Field mustard	mitochondrion	19.67	6.29
Bra011109.1-P	Field mustard	mitochondrion	23.01	5.98
Bra039012.1-P	Field mustard	mitochondrion	21.76	5.67
Bra011340.1-P	Field mustard	nucleus	0.42	1.06

Protein Annotations

EnsemblPlants:Bra021112.1	EnsemblPlants:Bra021112.1-P	EnsemblPlantsGene:Bra021112	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PFAM:PF03398	UniParc:UPI0002543F8E	UniProt:M4DX66
MapMan:35.2	:	:	:	:	:

Description

AT3G15490 (E=5e-050) | unknown protein

Coordinates

chrA01:-:23929457..23930518

Molecular Weight (calculated)

27565.9 Da

IEP (calculated)

9.642

GRAVY (calculated)

-0.649

Length

239 amino acids

Sequence
(BLAST)

001: MKETACAKNK EPKPGCFRNV FAVWFRSSRC RQASKCKLHI QSLQCSVKIH RRRRDCMVKQ SRSDVAKLLD SDRLQEARRK TRQIYEDEKM LSAYDQVDYF
101: CTSILQNFSP LDRQSDVHLL PEETKEAMAG LIFAASRIGE LKELQIIRSL FVQRFGLGFD KDCVDLRPGH LVSSEIVKIL ETKYSKDAFT PENLFGIFQN
201: YQTNSTTTNV DSITEDSASR NDHGIARSDT AKKRNQRKL

Best Arabidopsis Sequence Match ( AT3G15490.1 )
(BLAST)

001: MVRQSRSDIA QLLSYGRYSE ALPKAKQFYE DERRLSAYDQ VELFCTTILQ NISSLKYENN VDLLPEETKK AMAGIIFAAS RIGELEDLQH IRSFFVQRFG
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q4PSP2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.