Factsheet for Bra008502.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000147.1-P
Bra017053.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79910.1	Bra000147.1-P	AT2G39760.1	21798944
AT1G79910.1	Bra017053.1-P	AT2G39760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37561	Canola	nucleus	96.83	97.35
CDY41108	Canola	nucleus	95.25	95.5
AT1G79910.1	Thale cress	nucleus	76.78	76.38
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	32.19	70.52
KRG89505	Soybean	mitochondrion	26.65	53.44
GSMUA_Achr5P23530_001	Banana	nucleus	19.53	41.34
KRH44367	Soybean	mitochondrion	32.45	38.2
KRH47048	Soybean	mitochondrion	34.83	34.55
KRH23458	Soybean	mitochondrion	35.62	33.83
PGSC0003DMT400042551	Potato	nucleus	27.18	33.33
Solyc06g066690.2.1	Tomato	nucleus	26.65	32.69
Solyc03g120120.2.1	Tomato	nucleus	37.99	30.25
Bra018962.1-P	Field mustard	extracellular, vacuole	27.18	28.93
VIT_09s0002g04580.t01	Wine grape	nucleus	36.94	27.94
PGSC0003DMT400014529	Potato	nucleus	32.72	27.56
Solyc12g043150.1.1	Tomato	nucleus	35.36	26.27
Bra006177.1-P	Field mustard	mitochondrion	22.16	23.86
Bra012478.1-P	Field mustard	mitochondrion	19.26	22.6
Bra013184.1-P	Field mustard	mitochondrion	14.25	22.31
PGSC0003DMT400092826	Potato	nucleus	24.8	22.12
GSMUA_Achr6P29590_001	Banana	cytosol	26.39	21.83
Bra021112.1-P	Field mustard	nucleus	12.66	20.08
Bra027239.1-P	Field mustard	plastid	13.19	19.76
Bra010522.1-P	Field mustard	plastid	21.11	19.0
Bra011633.1-P	Field mustard	mitochondrion, plastid	21.37	18.62
Bra030391.1-P	Field mustard	nucleus	24.27	18.4
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	31.93	17.07
Os02t0159200-01	Rice	nucleus	29.55	16.59
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	31.66	16.53
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	31.13	16.25
EES04550	Sorghum	nucleus	29.29	16.25
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	31.13	16.23
Zm00001d053852_P001	Maize	nucleus	29.29	16.2
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	30.34	16.13
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	30.34	16.08
Os06t0687000-00	Rice	mitochondrion	30.61	15.91
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	29.82	15.8
HORVU6Hr1G025460.3	Barley	nucleus	30.34	15.62
KXG20673	Sorghum	cytosol, nucleus, plastid	31.66	15.29
GSMUA_Achr8P15690_001	Banana	mitochondrion	26.39	14.93
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	25.07	14.12
Bra011340.1-P	Field mustard	nucleus	3.43	13.83
Zm00001d014521_P001	Maize	mitochondrion	27.97	13.75
Bra036745.1-P	Field mustard	nucleus	20.32	13.6
Bra019826.1-P	Field mustard	mitochondrion	17.15	13.16
Bra016733.1-P	Field mustard	mitochondrion	16.89	8.57
Zm00001d036913_P001	Maize	cytosol	12.4	7.69
Bra039012.1-P	Field mustard	mitochondrion	18.21	7.52
Bra011109.1-P	Field mustard	mitochondrion	16.62	6.85
Zm00001d051744_P001	Maize	nucleus	7.65	5.78

Protein Annotations

EnsemblPlants:Bra008502.1	EnsemblPlants:Bra008502.1-P	EnsemblPlantsGene:Bra008502	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF14	PFAM:PF03398	SEG:seg
UniParc:UPI0002546E28	UniProt:M4CWA5	MapMan:35.2	:	:	:

Description

AT1G79910 (E=1e-125) | unknown protein

Coordinates

chrA02:-:16001747..16003660

Molecular Weight (calculated)

43195.1 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.886

Length

379 amino acids

Sequence
(BLAST)

001: MFDGLFKPKF YTKCKYLVKI TKTRVETVKR KKNSVCKYLK KDIVDLLNNN LDYNAYGRAE GLIEEKRRLS CYELLEQFCV CVASNVSLLQ KSSKCPEECC
101: EAISSLVYAA ARVSEVPELR DLRSLFGDRY GTNSLEQYVN PEFVERFKAE PPSKEMKVKL LQEIAVEYSI KWDAKSLEQR LYTPPADEAP QKTKTKQNTP
201: GKTMENRHGL SFHGRKDSLD SKSMSRRSED DSMGTSESCV SGPDEEEEKE DDPENKPFYY RFIMPTSYNN KPKIEKQESL PEKMTKSDLL LDDTDSPIAG
301: RPKPRSVRRR LANPPPPAAP GEDLVSSSSK NMRSESMEKA SGEGLRRMSR RTASWQANPS NNVPDFEEVA ARVDALTRN

Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)

001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.