Factsheet for Bra011109.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43502	Canola	mitochondrion	95.11	93.58
AT4G29440.1	Thale cress	mitochondrion	73.59	62.11
Zm00001d028142_P001	Maize	cytosol	6.2	57.0
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	6.09	56.0
Bra039012.1-P	Field mustard	mitochondrion	50.76	50.93
Bra011633.1-P	Field mustard	mitochondrion, plastid	15.43	32.64
Bra010522.1-P	Field mustard	plastid	14.78	32.3
Bra012478.1-P	Field mustard	mitochondrion	11.2	31.89
KRH60150	Soybean	cytosol, mitochondrion, nucleus, plastid	20.11	31.84
Bra036745.1-P	Field mustard	nucleus	17.07	27.74
KRH41442	Soybean	cytosol	13.37	27.58
KRH74171	Soybean	mitochondrion	29.13	25.19
KRH49036	Soybean	mitochondrion	28.48	24.88
Bra021112.1-P	Field mustard	nucleus	5.98	23.01
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	4.02	21.39
Os01t0706400-01	Rice	plasma membrane	25.54	21.34
TraesCS3B01G284600.1	Wheat	nucleus	25.76	21.33
Bra006177.1-P	Field mustard	mitochondrion	8.04	21.02
TraesCS3D01G253500.1	Wheat	nucleus	25.43	20.95
TraesCS3A01G252800.1	Wheat	cytosol	25.0	20.57
TraesCS3B01G288900.2	Wheat	plastid	25.65	20.49
HORVU3Hr1G066420.1	Barley	nucleus	26.3	20.46
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	23.91	20.28
Bra011340.1-P	Field mustard	nucleus	2.07	20.21
Solyc07g032230.2.1	Tomato	nucleus	23.48	20.13
Bra019826.1-P	Field mustard	mitochondrion	10.33	19.23
Bra027239.1-P	Field mustard	plastid	5.22	18.97
EES03498	Sorghum	nucleus, plastid	25.22	18.76
Zm00001d011684_P002	Maize	nucleus, plastid	24.57	18.66
GSMUA_Achr1P14380_001	Banana	nucleus	25.22	18.63
Bra013184.1-P	Field mustard	mitochondrion	4.78	18.18
Bra018962.1-P	Field mustard	extracellular, vacuole	6.85	17.7
Bra008502.1-P	Field mustard	nucleus	6.85	16.62
VIT_11s0016g02580.t01	Wine grape	mitochondrion	18.26	14.25
Bra016733.1-P	Field mustard	mitochondrion	9.89	12.18
Bra030391.1-P	Field mustard	nucleus	5.33	9.8

Protein Annotations

EnsemblPlants:Bra011109.1	EnsemblPlants:Bra011109.1-P	EnsemblPlantsGene:Bra011109	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF13	PFAM:PF03398
SEG:seg	UniParc:UPI0002545536	UniProt:M4D3Q5	MapMan:35.2	:	:

Description

AT4G29440 (E=5e-105) | unknown protein

Coordinates

chrA01:+:3839512..3842829

Molecular Weight (calculated)

101660.0 Da

IEP (calculated)

6.003

GRAVY (calculated)

-0.967

Length

920 amino acids

Sequence
(BLAST)

001: MKKVLHRSFK PAKCKTTLQM AASRLKILKN KKDTQIKQLR RELAQLLESG QTQTALIRVE HVVREEKTVA AYELVGIYCE LIVVRLGVID SQKTCPNDLK
101: EAVASVLYAS KRLSDVAELA DVVKHFSAKY GKDFVSAAVG LHSDSGVSRL LVDKLSVKAP DAPTKNKILK EIATEHNVTW EAETLVEPDP KSGASSSQSV
201: SGINNQPPSV QAPATANVAH SFYETDGRSS SRTASTDYYH QDPTPSGERT DGREHRPPNP GYVDSSPYET EFVDATTAAR AAAESAERAS FAARAAAELS
301: SKERMRTTMQ SSTESRNSSS YDDSRNEPSH RHSSSSSNVQ SGSFIKEEMP RSSYRQEEDQ STTRAELSKK NVDEQSENAS SWKRGHSRDN SLEMRPSDSF
401: AKVGREKQQQ PIKDEDVQLK KQPSLASSGS HRSYFSDDDN VTSSDHMDAP SIFEDTERQS HGHDVAPAFD DHSSFFDKPQ FDTEDSYGDE AEHGLGFSLL
501: GSSSNMPSET HSWSFKGDKS LGQQPSSSTS QVLEKERPSS PIFDDCPTSP PASLHEPKPS AKFDDYDRGS ESEEDDMGNK GVLSERVEEK PKVTTSHKSP
601: VAEAPDDLGR YFFPSDTEDQ EDDSMPLEES DAETPKGLSY GMSPPREKTL SKSVKEHVQT EVDPPLQTVP SSSIMKDLYT QKESNTDKRP ISIPPYSSSS
701: DDETEMELRK RVSIRNQDKR TELSTRLTHP PSRITHDVSK EGIPTRVSVR SQEKRTHKTT PAAVSYFHSV SSEDEDDEKE LRRGGSGIQT KTSISISRRT
801: KGQERRSSLV TAKTEKDSYD QDSIPKLIPE AKPMVKKQES AASSSLPKTE KASQEAPPKL AYKAKPQADE ERPAASSSSS IPETVSSPEQ VTLAKEKASH
901: VHPKLPDYDD IFAKLGALRR

Best Arabidopsis Sequence Match ( AT4G29440.1 )
(BLAST)

0001: MKKVLHRSFK PAKCKIALQM AASRLKILKN KKDTQIKQLR RELAHLLESG QTQTAKIRVE HVVREEKTVA AYELVGIYCE LLVARLGVID SQKTCPNDLK
0101: EAVASVLYAS QRLTDVGELS DIVKHFSAKY GKDFVSAAIG LQPDSGVSRL LVEKLSVKAP DGPTKIKILT EIATQHNVTW EAESLVESDP KETMSASGAS
0201: SSVSQPATGI KSESSRIQNN QPPVFQAAAT VNVSQNSYAT DGRSSSRMTS TDFNVGKTPD HYHQDPKPSG DRVDGREHRD HNPGHGDTSP FETKFVDATS
0301: AARAAAESAE RASFAARRAA ELSSKERMMM MQNSTESRNS SSYENLRSNP PHSRTSSSNM QGGGFGKEEL LKSNNRQVDQ STTTTRAESS KKTVDELSEN
0401: TSWRRGHSRE NSLEMRPNDS FAKIGREKQQ PGMDDINLSS SADVLNKKQS SRASSHSPSS NFSDDNDVTA LDHIDSPSIF EENKFQSTVG DRESYNDSPV
0501: VVVAPAFDDY SSFFDKPQFD TEDAYHDEPE QGLGFSLLGS SSKTSDHMPT EISSWSLEGH KDLGKLSSAS TSQVLEKEKP SSPPTFDDGP TSPPASLHEP
0601: EPSAKFDDYD RDSESEEDNL GRLSGRAEGK SKLTAQKSHM SEGPDDLGRY FFPSDTEDQG DDSKTQEESD AETPTGLKFG PLASGLENET TLPSYGSSPP
0701: RDKTSSKSIK EYLPTEVDPS RSSSLQTASS SSIRNELYTQ KASNSDKRPS SIPPDSSSSD DESDMELPKR VSFRYQEKRT ESRTRPTHLH SGVSHKDLEE
0801: EIPTRASTRS QDRRTHKTTP ASASASYFHT MSSDDEDEKE VHRDTAHIQT RPYISISRRT KGQERRPSLV TAKIDKVSFD EESPPKLSPE AKPLTKQQGS
0901: ASSLSYLPKT EKVSHDQESH PKLGLGAKPL IKQQGSASSL SFLPKTNKAS PDQDSPPKLV PKEKPAAKQR GSASSLSFLP KTDKASPDQD SPPKLLPKEK
1001: PAAKQQGSAT SSSSLPKTEK ISHYRESPSK LTPEAKSMAK QEGLASSSSS LPKTVTSPDP ETPAKEKASH VHPKLPDYDD IFAKLGALRR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNM2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.