Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52976 | Canola | mitochondrion | 82.02 | 94.5 |
| AT1G52315.1 | Thale cress | mitochondrion | 70.22 | 72.05 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 21.63 | 43.02 |
| Bra030391.1-P | Field mustard | nucleus | 60.11 | 42.8 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 17.98 | 36.99 |
| Bra008502.1-P | Field mustard | nucleus | 28.93 | 27.18 |
| Bra011340.1-P | Field mustard | nucleus | 6.18 | 23.4 |
| Bra006177.1-P | Field mustard | mitochondrion | 19.66 | 19.89 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 25.56 | 19.87 |
| Bra012478.1-P | Field mustard | mitochondrion | 17.7 | 19.5 |
| Bra021112.1-P | Field mustard | nucleus | 12.08 | 17.99 |
| Bra010522.1-P | Field mustard | plastid | 21.07 | 17.81 |
| Bra011633.1-P | Field mustard | mitochondrion, plastid | 20.51 | 16.78 |
| Bra027239.1-P | Field mustard | plastid | 11.8 | 16.6 |
| Bra013184.1-P | Field mustard | mitochondrion | 10.96 | 16.12 |
| Zm00001d053852_P001 | Maize | nucleus | 28.65 | 14.89 |
| Os02t0159200-01 | Rice | nucleus | 28.09 | 14.81 |
| EES04550 | Sorghum | nucleus | 28.37 | 14.79 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 27.81 | 14.78 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 29.49 | 14.69 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 29.49 | 14.69 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 29.21 | 14.59 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 29.49 | 14.27 |
| Os06t0687000-00 | Rice | mitochondrion | 29.21 | 14.27 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 28.09 | 14.1 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 28.37 | 13.91 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 28.09 | 13.76 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 25.56 | 13.52 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 29.78 | 13.5 |
| Zm00001d014521_P001 | Maize | mitochondrion | 29.21 | 13.49 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 27.25 | 13.36 |
| Bra019826.1-P | Field mustard | mitochondrion | 17.42 | 12.55 |
| Bra036745.1-P | Field mustard | nucleus | 19.66 | 12.37 |
| Bra016733.1-P | Field mustard | mitochondrion | 16.57 | 7.9 |
| Bra011109.1-P | Field mustard | mitochondrion | 17.7 | 6.85 |
| Bra039012.1-P | Field mustard | mitochondrion | 17.42 | 6.76 |
| Zm00001d036913_P001 | Maize | cytosol | 10.67 | 6.22 |
| Zm00001d051744_P001 | Maize | nucleus | 5.9 | 4.18 |
Protein Annotations
| EnsemblPlants:Bra018962.1 | EnsemblPlants:Bra018962.1-P | EnsemblPlantsGene:Bra018962 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | SEG:seg |
| SignalP:SignalP-noTM | UniParc:UPI000253E902 | UniProt:M4DR19 | MapMan:35.2 | : | : |
Description
AT1G52315 (E=7e-111) | unknown protein
Coordinates
chrA06:-:1001325..1003309
Molecular Weight (calculated)
40825.2 Da
IEP (calculated)
9.549
GRAVY (calculated)
-0.530
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLWTSFNIL DLVCAMMLTM MSHVVQPLHV GKSATSYMKI RLEIVRKRRI AMIKFLKMDI VEFLKNGLDY DAYRRAEVLL EELRIISCYD ILEQFCDCIS
101: ENLSLMLKKR ECPEECREAV SSLIYAAAWV PDVPELKDLR AVFTRRFGSF IASSVNYELV EKTELRRRPS RELKIQTVKD IAKEFSIDWD PTALNLLLLR
201: QTSALQIEDK VETGADDPNI ERKKSIVNDQ SENESVLSQA WTRDSLSNRS LSSSSSSSFG SPRRGTEKKK KKKILPYGII SPSETKPGAG NDEKAQEEKL
301: EKKKSIDQEN SKLLKPQGSE KEASSTRKNE RTSSFQRPKL LDYDDVVARL AALRRR
101: ENLSLMLKKR ECPEECREAV SSLIYAAAWV PDVPELKDLR AVFTRRFGSF IASSVNYELV EKTELRRRPS RELKIQTVKD IAKEFSIDWD PTALNLLLLR
201: QTSALQIEDK VETGADDPNI ERKKSIVNDQ SENESVLSQA WTRDSLSNRS LSSSSSSSFG SPRRGTEKKK KKKILPYGII SPSETKPGAG NDEKAQEEKL
301: EKKKSIDQEN SKLLKPQGSE KEASSTRKNE RTSSFQRPKL LDYDDVVARL AALRRR
001: MFLRCFKPKF YKKSKSTTSY MKIRIDIVRR KRIAMVRNYK TDIVNFLKNG QDSEAYRRAE LLLEELRIIS CYDLIERFCD CISENLSLML KKRECPEECR
101: EAVSSLIYAT AWVPDVPELK DLRAVFTKRF GNFIASSVNH ELVEKTELLR PPSRELKIQT VKDVANEFSI NWDPTPLKLM LLRETSALQI KDKVETRADY
201: LNKDTEKSFM DEHSDDESVL SESWRIDSLS KGSLSSSSSS SSSSLRRVSV RKKKGKKILP YGIISSPDTK LGAGNDEKAQ EEKEEKRKIA DQENSRLLGI
301: QGSRSLTSTS NNEVSTIREN ERMSSFQRPN LLDYDDVVAR LAALRRR
101: EAVSSLIYAT AWVPDVPELK DLRAVFTKRF GNFIASSVNH ELVEKTELLR PPSRELKIQT VKDVANEFSI NWDPTPLKLM LLRETSALQI KDKVETRADY
201: LNKDTEKSFM DEHSDDESVL SESWRIDSLS KGSLSSSSSS SSSSLRRVSV RKKKGKKILP YGIISSPDTK LGAGNDEKAQ EEKEEKRKIA DQENSRLLGI
301: QGSRSLTSTS NNEVSTIREN ERMSSFQRPN LLDYDDVVAR LAALRRR
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4ICV8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.