Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007888_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | Zm00001d007888_P002 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051744_P001 | Maize | nucleus | 77.41 | 94.22 |
| Zm00001d014521_P001 | Maize | mitochondrion | 80.03 | 63.42 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 70.21 | 54.65 |
| Os06t0687000-00 | Rice | mitochondrion | 37.64 | 31.55 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 34.7 | 29.9 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 35.02 | 29.48 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 33.55 | 28.2 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 33.06 | 27.82 |
| Zm00001d053852_P001 | Maize | nucleus | 22.26 | 19.85 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 4.91 | 16.76 |
| KRG89505 | Soybean | mitochondrion | 5.07 | 16.4 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 4.42 | 15.61 |
| Zm00001d052541_P001 | Maize | extracellular | 3.27 | 13.89 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 14.89 | 13.52 |
| CDX87282 | Canola | cytosol | 4.42 | 13.37 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 10.8 | 13.17 |
| KRH44367 | Soybean | mitochondrion | 6.71 | 12.73 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 9.49 | 12.66 |
| Zm00001d034058_P004 | Maize | mitochondrion | 3.93 | 12.63 |
| CDY49898 | Canola | mitochondrion | 5.56 | 12.41 |
| Bra008502.1-P | Field mustard | nucleus | 7.69 | 12.4 |
| AT1G79910.1 | Thale cress | nucleus | 7.69 | 12.34 |
| KRH23458 | Soybean | mitochondrion | 8.02 | 12.28 |
| CDY37561 | Canola | nucleus | 7.53 | 12.2 |
| CDY41108 | Canola | nucleus | 7.53 | 12.17 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 12.93 | 11.79 |
| PGSC0003DMT400092826 | Potato | nucleus | 8.18 | 11.76 |
| CDX87900 | Canola | mitochondrion | 5.4 | 11.46 |
| Zm00001d028457_P001 | Maize | mitochondrion | 3.6 | 11.0 |
| AT1G52315.1 | Thale cress | mitochondrion | 6.22 | 10.95 |
| Solyc03g120120.2.1 | Tomato | nucleus | 8.51 | 10.92 |
| Zm00001d034057_P001 | Maize | mitochondrion | 4.09 | 10.92 |
| Solyc07g022860.2.1 | Tomato | nucleus | 9.82 | 10.89 |
| PGSC0003DMT400014529 | Potato | nucleus | 8.02 | 10.89 |
| PGSC0003DMT400022180 | Potato | nucleus | 9.66 | 10.69 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 6.22 | 10.67 |
| Solyc12g043150.1.1 | Tomato | nucleus | 8.84 | 10.59 |
| CDY52976 | Canola | mitochondrion | 5.24 | 10.36 |
| KRH47048 | Soybean | mitochondrion | 6.38 | 10.21 |
| CDX87899 | Canola | nucleus | 4.58 | 10.14 |
| Zm00001d047884_P001 | Maize | cytosol | 2.29 | 9.79 |
| CDY49897 | Canola | nucleus | 4.26 | 9.7 |
| PGSC0003DMT400042551 | Potato | nucleus | 4.75 | 9.39 |
| Zm00001d047885_P001 | Maize | mitochondrion | 3.76 | 9.2 |
| Solyc06g066690.2.1 | Tomato | nucleus | 4.58 | 9.06 |
| Zm00001d043813_P001 | Maize | mitochondrion | 4.75 | 9.03 |
| Zm00001d047887_P001 | Maize | mitochondrion | 3.6 | 8.84 |
| Zm00001d047886_P001 | Maize | mitochondrion | 3.6 | 8.8 |
| KRH60286 | Soybean | nucleus | 10.47 | 8.36 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 9.82 | 8.26 |
| CDX75238 | Canola | nucleus | 8.51 | 8.24 |
| CDX68838 | Canola | nucleus | 8.35 | 8.1 |
| KRH48400 | Soybean | mitochondrion, nucleus | 9.49 | 7.89 |
| KRH41578 | Soybean | nucleus | 10.15 | 7.77 |
| KRH39280 | Soybean | mitochondrion, nucleus | 9.33 | 7.76 |
| AT4G32350.1 | Thale cress | nucleus | 9.17 | 7.65 |
| Zm00001d033714_P001 | Maize | mitochondrion | 4.26 | 7.41 |
| Bra030391.1-P | Field mustard | nucleus | 5.56 | 6.8 |
| Zm00001d028456_P001 | Maize | mitochondrion | 5.89 | 6.78 |
| Zm00001d021453_P002 | Maize | plastid | 5.24 | 6.12 |
| Zm00001d028142_P001 | Maize | cytosol | 0.98 | 6.0 |
| Zm00001d048482_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 0.98 | 6.0 |
| Zm00001d024425_P003 | Maize | cytosol | 5.56 | 6.0 |
| Zm00001d049479_P003 | Maize | cytosol, mitochondrion, plastid | 5.07 | 5.68 |
| KRH06586 | Soybean | cytosol | 0.49 | 4.92 |
| Zm00001d011684_P002 | Maize | nucleus, plastid | 5.73 | 2.89 |
Protein Annotations
| EntrezGene:103629793 | Gene3D:2.40.150.20 | MapMan:35.1 | UniProt:A0A1D6LSE9 | ProteinID:AQK82375.1 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0015934 | GO:GO:0019538 | InterPro:IPR036853 | InterPro:Ist1 |
| HAMAP:MF_01367 | PFAM:PF00238 | ScanProsite:PS00049 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF40 | InterPro:Ribosomal_L14P |
| InterPro:Ribosomal_L14P_CS | InterPro:Ribosomal_L14P_bac-type | InterPro:Ribosomal_L14_sf | SMART:SM01374 | SUPFAM:SSF50193 | TIGRFAMs:TIGR01067 |
| UniParc:UPI000843AEB6 | EnsemblPlantsGene:Zm00001d036913 | EnsemblPlants:Zm00001d036913_P001 | EnsemblPlants:Zm00001d036913_T001 | SEG:seg | : |
Description
Regulator of Vps4 activity in the MVB pathway protein
Coordinates
chr6:-:106312472..106315373
Molecular Weight (calculated)
68507.5 Da
IEP (calculated)
9.410
GRAVY (calculated)
-0.836
Length
611 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTNLKVVDN SGAKRVMSIQ SLRGKKGARL GDMIIGSVKE AQPCGKVKKG DVVYGVVVRA AMKKGRSDGS EVQFDNNAVV LVNKKGELIG TRVFIPVPHE
101: LRKKKHLKIV ALAEHIFIWK LDSTEFTNEE RFQVMQSVAE ELSVSFDAKE LELKLWASLQ TEHDMLEKGS RKPAELAMPS SSKQICVENA SCEEQEDILE
201: KSLTKPTEPA MSLFDKTKYN GDAPCERKNK DMLENYSTKL IELATDSSNN QKVTENVPCK RNYDAEPAHH TEKVEIQLIQ KNIQSVADAH HTIDENSRKQ
301: QPYVSDEKEH LQKPMSPVDT NRTQKDVQKL NRRAVRHLEK ELMEAVELDL NGLTKNGFGA VRFPEAEGNK TVQLNVKPNE VARDFHIEKE NDEVLHCSRL
401: HGGSEHNEGH ADSGLRAQRL ENQGHPVSPL SGNTRKKAPY TKPNVVNIKN PTKKQANNGF LHDKPQHLAD LGYPVQKGQG DPERALTMLS PYVEPKSNMQ
501: PVNDDPEKQT SNGYRKSNIP GQTDHLENKN VLRPVSVRRR TAKLPAPVDA YVECRTMRSK TNAQITPSSQ SKHIGRRNGA LNHKNNSGRL MQRMQPEAAE
601: TAIDCGNLLL T
101: LRKKKHLKIV ALAEHIFIWK LDSTEFTNEE RFQVMQSVAE ELSVSFDAKE LELKLWASLQ TEHDMLEKGS RKPAELAMPS SSKQICVENA SCEEQEDILE
201: KSLTKPTEPA MSLFDKTKYN GDAPCERKNK DMLENYSTKL IELATDSSNN QKVTENVPCK RNYDAEPAHH TEKVEIQLIQ KNIQSVADAH HTIDENSRKQ
301: QPYVSDEKEH LQKPMSPVDT NRTQKDVQKL NRRAVRHLEK ELMEAVELDL NGLTKNGFGA VRFPEAEGNK TVQLNVKPNE VARDFHIEKE NDEVLHCSRL
401: HGGSEHNEGH ADSGLRAQRL ENQGHPVSPL SGNTRKKAPY TKPNVVNIKN PTKKQANNGF LHDKPQHLAD LGYPVQKGQG DPERALTMLS PYVEPKSNMQ
501: PVNDDPEKQT SNGYRKSNIP GQTDHLENKN VLRPVSVRRR TAKLPAPVDA YVECRTMRSK TNAQITPSSQ SKHIGRRNGA LNHKNNSGRL MQRMQPEAAE
601: TAIDCGNLLL T
001: MAAAFASRLT RGGRSLLGGL NNGGSMNSSN GMMNESILSQ QQQRRTFIQM GTVLKVVDNS GAKKVMCIQA LKGKKGARLG DTIVASVKEA MPNGKVKKGA
101: VVYGVVVRAA MQRGRVDGSE VRFDDNAVVL VDSKDKNTKT DRQPIGTRVF GPVPHELRKK KHLKILALAQ HVA
101: VVYGVVVRAA MQRGRVDGSE VRFDDNAVVL VDSKDKNTKT DRQPIGTRVF GPVPHELRKK KHLKILALAQ HVA
Arabidopsis Description
HLP50S ribosomal protein HLP, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93Z17]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.