Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g052960.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | Solyc05g052960.2.1 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042551 | Potato | nucleus | 91.59 | 91.59 |
| KRG89505 | Soybean | mitochondrion | 28.16 | 46.03 |
| CDX87282 | Canola | cytosol | 24.92 | 38.12 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 21.68 | 37.43 |
| Solyc03g120120.2.1 | Tomato | nucleus | 51.13 | 33.19 |
| Solyc12g043150.1.1 | Tomato | nucleus | 48.87 | 29.61 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 16.18 | 28.9 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 45.31 | 27.94 |
| KRH47048 | Soybean | mitochondrion | 34.3 | 27.75 |
| KRH44367 | Soybean | mitochondrion | 28.16 | 27.02 |
| CDY41108 | Canola | nucleus | 33.01 | 26.98 |
| CDY37561 | Canola | nucleus | 32.69 | 26.79 |
| Bra008502.1-P | Field mustard | nucleus | 32.69 | 26.65 |
| AT1G79910.1 | Thale cress | nucleus | 32.04 | 25.98 |
| KRH23458 | Soybean | mitochondrion | 33.33 | 25.81 |
| Solyc02g085830.2.1 | Tomato | mitochondrion | 14.89 | 22.12 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 31.39 | 21.18 |
| Solyc12g010700.1.1 | Tomato | cytosol | 25.24 | 17.22 |
| Solyc04g007230.2.1 | Tomato | mitochondrion | 17.8 | 17.03 |
| Os02t0159200-01 | Rice | nucleus | 34.3 | 15.7 |
| Zm00001d053852_P001 | Maize | nucleus | 33.66 | 15.18 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 34.63 | 15.01 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 34.63 | 14.96 |
| EES04550 | Sorghum | nucleus | 33.01 | 14.93 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 34.3 | 14.83 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 31.72 | 14.56 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 31.07 | 14.33 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 33.98 | 14.27 |
| Os06t0687000-00 | Rice | mitochondrion | 33.66 | 14.27 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 33.33 | 14.19 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 35.6 | 14.01 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 31.72 | 13.82 |
| Solyc02g083130.2.1 | Tomato | plastid | 24.27 | 13.81 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 32.36 | 13.77 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 32.36 | 13.76 |
| Solyc04g072560.2.1 | Tomato | nucleus, unclear | 22.98 | 13.45 |
| Solyc05g009550.2.1 | Tomato | mitochondrion | 18.45 | 13.35 |
| Solyc07g022860.2.1 | Tomato | nucleus | 22.01 | 12.34 |
| Zm00001d014521_P001 | Maize | mitochondrion | 30.42 | 12.19 |
| Solyc07g054230.2.1 | Tomato | nucleus | 10.03 | 6.9 |
| Solyc07g032230.2.1 | Tomato | nucleus | 19.74 | 5.68 |
| Zm00001d036913_P001 | Maize | cytosol | 9.06 | 4.58 |
| Zm00001d051744_P001 | Maize | nucleus | 3.56 | 2.19 |
Protein Annotations
| EnsemblPlants:Solyc06g066690.2.1 | EnsemblPlantsGene:Solyc06g066690.2 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | UniParc:UPI0002765F78 | UniProt:K4C7U4 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:41905575..41908402
Molecular Weight (calculated)
35535.1 Da
IEP (calculated)
7.387
GRAVY (calculated)
-0.880
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDSWKKNKF YSKCKSTINQ TKTRIEMIRK KRNSMQKHLR NDIADLVKSE LVVNAYDRTE GLLVELNLLS CYDFLDQYCE QILSHLDTIS TQRECPEDCK
101: EPVGSLMFAA ARLADLPELR QLRTMLNERY GNSLESCVNN QFAAKLKPVW HKMDVKLQLM QDIAAEYGLE WNSKALQQRL YEQEHADVAS NNKKSKDAHH
201: IESRDDDSVE NANSEQKSLR MKHLDQSGHK DSGHKPNGEI SSHRNREGPP GRTTSLPIEL EQITPEELMK GHSRAKSYTP DMFGHVHPRV PNYEEVVARL
301: TDLGGKSKE
101: EPVGSLMFAA ARLADLPELR QLRTMLNERY GNSLESCVNN QFAAKLKPVW HKMDVKLQLM QDIAAEYGLE WNSKALQQRL YEQEHADVAS NNKKSKDAHH
201: IESRDDDSVE NANSEQKSLR MKHLDQSGHK DSGHKPNGEI SSHRNREGPP GRTTSLPIEL EQITPEELMK GHSRAKSYTP DMFGHVHPRV PNYEEVVARL
301: TDLGGKSKE
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.