Factsheet for HORVU6Hr1G025460.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G064920.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79910.1	HORVU2Hr1G064920.1	AT2G39760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	89.81	92.45
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	88.86	91.73
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	88.45	91.05
Os02t0159200-01	Rice	nucleus	61.28	66.81
EES04550	Sorghum	nucleus	59.1	63.69
Zm00001d053852_P001	Maize	nucleus	56.79	61.02
GSMUA_Achr5P23530_001	Banana	nucleus	13.04	53.63
KRH06586	Soybean	cytosol	4.08	49.18
KRG89505	Soybean	mitochondrion	11.14	43.39
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	41.98	42.56
GSMUA_Achr6P29590_001	Banana	cytosol	24.73	39.74
CDX87282	Canola	cytosol	9.65	35.15
PGSC0003DMT400042551	Potato	nucleus	14.67	34.95
GSMUA_Achr8P15690_001	Banana	mitochondrion	31.79	34.93
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	31.39	34.32
Solyc06g066690.2.1	Tomato	nucleus	14.27	33.98
CDX87899	Canola	nucleus	12.64	33.7
CDY49898	Canola	mitochondrion	12.5	33.58
VIT_09s0002g04580.t01	Wine grape	nucleus	22.83	33.53
CDY52976	Canola	mitochondrion	13.99	33.33
CDX87900	Canola	mitochondrion	12.5	31.94
CDY49897	Canola	nucleus	11.55	31.72
KRH23458	Soybean	mitochondrion	16.98	31.33
AT1G52315.1	Thale cress	mitochondrion	14.54	30.84
CDY37561	Canola	nucleus	15.62	30.5
AT1G79910.1	Thale cress	nucleus	15.76	30.45
CDY41108	Canola	nucleus	15.62	30.42
Bra008502.1-P	Field mustard	nucleus	15.62	30.34
KRH44367	Soybean	mitochondrion	13.04	29.81
Bra018962.1-P	Field mustard	extracellular, vacuole	14.27	29.49
Solyc03g120120.2.1	Tomato	nucleus	18.89	29.2
KRH47048	Soybean	mitochondrion	15.08	29.06
HORVU4Hr1G062250.1	Barley	mitochondrion	7.2	28.8
PGSC0003DMT400014529	Potato	nucleus	17.53	28.67
Solyc12g043150.1.1	Tomato	nucleus	19.43	28.04
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	6.52	27.75
CDX68838	Canola	nucleus	22.15	25.87
CDX75238	Canola	nucleus	22.01	25.67
VIT_11s0016g04010.t01	Wine grape	nucleus	25.0	25.34
PGSC0003DMT400092826	Potato	nucleus	13.99	24.24
KRH48400	Soybean	mitochondrion, nucleus	23.51	23.54
KRH39280	Soybean	mitochondrion, nucleus	23.51	23.54
AT4G32350.1	Thale cress	nucleus	22.28	22.4
KRH60286	Soybean	nucleus	22.28	21.41
PGSC0003DMT400022180	Potato	nucleus	16.03	21.38
Solyc07g022860.2.1	Tomato	nucleus	15.9	21.23
KRH41578	Soybean	nucleus	22.28	20.55
HORVU4Hr1G062260.2	Barley	plastid	7.61	19.65
Bra030391.1-P	Field mustard	nucleus	12.23	18.0
HORVU3Hr1G063860.1	Barley	plastid	8.42	17.08
HORVU5Hr1G086370.1	Barley	nucleus, plastid	12.09	16.3
HORVU3Hr1G098720.3	Barley	cytosol	10.19	14.62
HORVU4Hr1G062110.1	Barley	mitochondrion	9.78	13.14
HORVU3Hr1G066420.1	Barley	nucleus	13.04	8.11

Protein Annotations

EnsemblPlants:HORVU6Hr1G025460.3	EnsemblPlantsGene:HORVU6Hr1G025460	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF40	PFAM:PF03398	SEG:seg	UniParc:UPI000B48411B
UniProt:A0A287TMP2	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:92405291..92409734

Molecular Weight (calculated)

83381.8 Da

IEP (calculated)

10.001

GRAVY (calculated)

-1.201

Length

736 amino acids

Sequence
(BLAST)

001: ERENKRRRRG RRRRRRRPLE MFDSLLNSKF YNKCKHATKC TRTRLDLVRK KKQAMVKFLR KDVADLLTNG LESHAFGRME GLIVEMNQAS CYDMIEQYCD
101: YIGKQLNNLQ KQSECPHEAL EAVSTLIFAA ARYPDLPELC ELRHVFTEKY GASIEPFVSS EFVQKLQNKS FTKEEKLQVI EDVADEFAIP FNTRTFELKI
201: SGAPPNKNEL LKKGSFNGVE VEASGRNGHR VDKHAALERK SKSIPDGREW KQEFQLKPKD IHVVPDYIGQ VGEKSRKNYP DKPIEKKHLD NDVPPVDMMR
301: RNGHQKEMNK DEKKGGQSWR ELMNAEELDL NGSKKQEVAV AKPAQREMKK IVPPYTDLKG TEKKDGAEKA NGKGYHRTNM AGGTDHNWGH ADLGLKTLGL
401: EKQETESAGT LNVNGNGKTV NKVPPYSKPY RPASEKSAED DNIGVYNRGR HMGEFGQPVQ DRQQMPEKLV NMRPPYVKPS SNTKSVHETP TDESANGYKL
501: NGSEATGHWR DGLVDDDGAP RPVSVRRKSS RPPTHGSLHD EATNDEKATN QAPGGRTRRP SSRNGSQDDY ERRKHSSRRN GSTSGSDYQT EEDETDTAID
601: FGNLLPRAPR KHRSRSAHPR EGGGHDDEER MMDKLLRHYS KKGMEREEEH RTRTKSRIPR PRPDQPADGN NRDGAPSHPE RTVSLPAESG SPVARTKAPA
701: PARSTSLQQD TSRGNVHPRM PDFDELAARI SAMKRA

Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)

001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.