Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000147.1-P | |
| Bra017053.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | Bra000147.1-P | AT2G39760.1 | 21798944 |
| AT1G79910.1 | Bra017053.1-P | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87282 | Canola | cytosol | 78.61 | 67.33 |
| AT1G79910.1 | Thale cress | nucleus | 71.1 | 32.28 |
| Bra008502.1-P | Field mustard | nucleus | 70.52 | 32.19 |
| KRG89505 | Soybean | mitochondrion | 34.1 | 31.22 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 29.48 | 28.49 |
| KRH44367 | Soybean | mitochondrion | 41.04 | 22.05 |
| KRH47048 | Soybean | mitochondrion | 39.88 | 18.06 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 36.99 | 17.98 |
| KRH23458 | Soybean | mitochondrion | 37.57 | 16.29 |
| Solyc06g066690.2.1 | Tomato | nucleus | 28.9 | 16.18 |
| PGSC0003DMT400042551 | Potato | nucleus | 28.32 | 15.86 |
| Bra012478.1-P | Field mustard | mitochondrion | 29.48 | 15.79 |
| Bra027239.1-P | Field mustard | plastid | 21.39 | 14.62 |
| Bra013184.1-P | Field mustard | mitochondrion | 20.23 | 14.46 |
| Bra021112.1-P | Field mustard | nucleus | 19.65 | 14.23 |
| PGSC0003DMT400014529 | Potato | nucleus | 36.42 | 14.0 |
| Bra006177.1-P | Field mustard | mitochondrion | 28.32 | 13.92 |
| Solyc03g120120.2.1 | Tomato | nucleus | 38.15 | 13.87 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 38.73 | 13.37 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 32.37 | 12.23 |
| Solyc12g043150.1.1 | Tomato | nucleus | 34.1 | 11.57 |
| Bra030391.1-P | Field mustard | nucleus | 32.95 | 11.4 |
| PGSC0003DMT400092826 | Potato | nucleus | 27.17 | 11.06 |
| Bra010522.1-P | Field mustard | plastid | 24.28 | 9.98 |
| Bra011633.1-P | Field mustard | mitochondrion, plastid | 24.28 | 9.66 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 34.1 | 8.77 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 32.37 | 8.36 |
| Bra036745.1-P | Field mustard | nucleus | 27.17 | 8.3 |
| Bra019826.1-P | Field mustard | mitochondrion | 23.12 | 8.1 |
| Os02t0159200-01 | Rice | nucleus | 30.64 | 7.85 |
| EES04550 | Sorghum | nucleus | 29.48 | 7.47 |
| Zm00001d053852_P001 | Maize | nucleus | 29.48 | 7.45 |
| Os06t0687000-00 | Rice | mitochondrion | 30.64 | 7.27 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 29.48 | 7.19 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 30.06 | 7.16 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.06 | 7.16 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 29.48 | 7.15 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 29.48 | 7.02 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 28.9 | 6.99 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 28.32 | 6.85 |
| Zm00001d014521_P001 | Maize | mitochondrion | 29.48 | 6.61 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 27.75 | 6.52 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 29.48 | 6.5 |
| Bra016733.1-P | Field mustard | mitochondrion | 23.12 | 5.35 |
| Bra039012.1-P | Field mustard | mitochondrion | 23.7 | 4.47 |
| Zm00001d036913_P001 | Maize | cytosol | 15.61 | 4.42 |
| Bra011109.1-P | Field mustard | mitochondrion | 21.39 | 4.02 |
| Zm00001d051744_P001 | Maize | nucleus | 8.09 | 2.79 |
| Bra011340.1-P | Field mustard | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra035204.1 | EnsemblPlants:Bra035204.1-P | EnsemblPlantsGene:Bra035204 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | SEG:seg |
| UniParc:UPI0002541EA4 | UniProt:M4F2A6 | MapMan:35.2 | : | : | : |
Description
AT1G79910 (E=6e-052) | unknown protein
Coordinates
chrA07:-:22578266..22578951
Molecular Weight (calculated)
19685.6 Da
IEP (calculated)
7.024
GRAVY (calculated)
-0.416
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MISCLRVWQA QGLIEEKRRL SCYELLEQFC VCVASNVSLL QNSSKCPDEC REAISSLVYA AARVSEVPEL CNLRSLFAER YGKSLLLQSS MMQLVERFKA
101: EPPSKEMKVE LLQEIAREYS IKWDAKSLEQ RLYGHEDRVN GESKRRGDKE DESSNSVVGG SPTSQILMRS RLA
101: EPPSKEMKVE LLQEIAREYS IKWDAKSLEQ RLYGHEDRVN GESKRRGDKE DESSNSVVGG SPTSQILMRS RLA
001: MQVVGQDNED KSRHGEEEEK LGLQISQERH CRSSQEQPRL QCIWQEGLIE EKRRLACYEF LEQFCNCVAS NVSLLQKSIR CPDECREAIS SLVYAAARVS
101: EVPELRDLRS LFAERYGNTL DQFVNPEFVE RFKAEPPSKE MKVELLQEIA REYSIKWDAK SLEQRLYTPP HHHHVHTETE EPKTEKTNSE PEKTMEKRSS
201: LSFHGREDSM DDSNKSIMST SEEDSMSTSG SCMTGPEDDP EMKPFYYRFM TPAPYTKPKI EKQESLPEKM TTSHLMDTES PTGGKPKPRS VRRRFANPPP
301: EAETEGEALK LKVESKNMMR ASESMGKASG EGFRRMSRRT ASWQHKPSSC VPDFDEVAAR VDALSRY
101: EVPELRDLRS LFAERYGNTL DQFVNPEFVE RFKAEPPSKE MKVELLQEIA REYSIKWDAK SLEQRLYTPP HHHHVHTETE EPKTEKTNSE PEKTMEKRSS
201: LSFHGREDSM DDSNKSIMST SEEDSMSTSG SCMTGPEDDP EMKPFYYRFM TPAPYTKPKI EKQESLPEKM TTSHLMDTES PTGGKPKPRS VRRRFANPPP
301: EAETEGEALK LKVESKNMMR ASESMGKASG EGFRRMSRRT ASWQHKPSSC VPDFDEVAAR VDALSRY
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.