Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G79910.1 | KRG97837 | AT2G39760.1 | 21798944 |
AT1G79910.1 | KRH31032 | AT2G39760.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRG89505 | Soybean | mitochondrion | 39.6 | 83.6 |
KRH06586 | Soybean | cytosol | 8.27 | 54.1 |
KRH44367 | Soybean | mitochondrion | 42.11 | 52.17 |
KRH47048 | Soybean | mitochondrion | 44.61 | 46.6 |
CDX87282 | Canola | cytosol | 23.31 | 46.04 |
GSMUA_Achr5P23530_001 | Banana | nucleus | 20.3 | 45.25 |
Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 16.29 | 37.57 |
AT1G79910.1 | Thale cress | nucleus | 34.09 | 35.7 |
Bra008502.1-P | Field mustard | nucleus | 33.83 | 35.62 |
CDY37561 | Canola | nucleus | 33.58 | 35.54 |
CDY41108 | Canola | nucleus | 33.58 | 35.45 |
PGSC0003DMT400042551 | Potato | nucleus | 26.07 | 33.66 |
Solyc06g066690.2.1 | Tomato | nucleus | 25.81 | 33.33 |
Solyc03g120120.2.1 | Tomato | nucleus | 37.84 | 31.72 |
VIT_09s0002g04580.t01 | Wine grape | nucleus | 38.35 | 30.54 |
PGSC0003DMT400014529 | Potato | nucleus | 34.34 | 30.44 |
Solyc12g043150.1.1 | Tomato | nucleus | 35.59 | 27.84 |
GSMUA_Achr6P29590_001 | Banana | cytosol | 29.57 | 25.76 |
PGSC0003DMT400092826 | Potato | nucleus | 26.07 | 24.47 |
KRH26063 | Soybean | cytosol | 11.03 | 21.05 |
KRG90825 | Soybean | mitochondrion | 16.54 | 20.37 |
KRH35947 | Soybean | mitochondrion | 16.54 | 20.37 |
KRH55350 | Soybean | extracellular | 10.28 | 20.1 |
KRH07948 | Soybean | mitochondrion | 21.8 | 19.73 |
KRH39280 | Soybean | mitochondrion, nucleus | 36.09 | 19.59 |
KRH48400 | Soybean | mitochondrion, nucleus | 35.59 | 19.32 |
KRH69704 | Soybean | mitochondrion | 20.55 | 18.72 |
Os06t0687000-00 | Rice | mitochondrion | 33.08 | 18.11 |
Os02t0159200-01 | Rice | nucleus | 30.58 | 18.07 |
KRH60286 | Soybean | nucleus | 34.59 | 18.02 |
KRH35011 | Soybean | mitochondrion | 17.54 | 17.99 |
EES04550 | Sorghum | nucleus | 30.33 | 17.72 |
GSMUA_Achr8P15690_001 | Banana | mitochondrion | 29.57 | 17.61 |
TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 31.33 | 17.53 |
TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 31.33 | 17.48 |
KRH41578 | Soybean | nucleus | 34.59 | 17.29 |
GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 29.07 | 17.24 |
KRH45249 | Soybean | mitochondrion | 17.04 | 17.17 |
Zm00001d053852_P001 | Maize | nucleus | 29.32 | 17.08 |
TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.33 | 17.07 |
HORVU6Hr1G025460.3 | Barley | nucleus | 31.33 | 16.98 |
TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 30.33 | 16.92 |
KRH70127 | Soybean | mitochondrion, nucleus | 16.04 | 16.84 |
TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 30.33 | 16.64 |
KRH75395 | Soybean | mitochondrion | 16.79 | 16.63 |
TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.08 | 16.53 |
HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 30.08 | 16.53 |
Zm00001d014521_P001 | Maize | mitochondrion | 31.58 | 16.34 |
KXG20673 | Sorghum | cytosol, nucleus, plastid | 31.58 | 16.05 |
KRH08570 | Soybean | nucleus | 19.3 | 14.58 |
KRH70215 | Soybean | nucleus | 19.3 | 14.34 |
KRH01764 | Soybean | mitochondrion | 15.54 | 14.03 |
KRH60150 | Soybean | cytosol, mitochondrion, nucleus, plastid | 20.3 | 13.94 |
KRH22410 | Soybean | mitochondrion, nucleus | 22.81 | 13.66 |
KRH46919 | Soybean | mitochondrion | 14.04 | 13.66 |
KRH26928 | Soybean | nucleus | 21.55 | 12.97 |
KRH41442 | Soybean | cytosol | 13.28 | 11.88 |
KRH74171 | Soybean | mitochondrion | 23.06 | 8.65 |
KRH49036 | Soybean | mitochondrion | 22.06 | 8.36 |
Zm00001d036913_P001 | Maize | cytosol | 12.28 | 8.02 |
Zm00001d051744_P001 | Maize | nucleus | 7.52 | 5.98 |
Protein Annotations
EMBL:ACUP02008468 | EnsemblPlants:KRH23458 | EnsemblPlantsGene:GLYMA_13G358600 | EntrezGene:100790792 | Gene3D:1.20.1260.60 | GO:GO:0006810 |
GO:GO:0008150 | GO:GO:0015031 | InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 |
ProteinID:KRH23458 | ProteinID:KRH23458.1 | SEG:seg | UniParc:UPI0006EDC41B | UniProt:A0A0R0H5J8 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr13:-:44620541..44622697
Molecular Weight (calculated)
45644.2 Da
IEP (calculated)
8.586
GRAVY (calculated)
-0.849
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNALFKPKF YSKCKSRLKL IKMRLETICK KRSAVQKFLK KDIADLLRSA LDYNAYGRAE GVLVEQNLTF CYEIIGKFTT CILGHVGDLY KQRDCPAECK
101: EAIQSLIYAA ARFSDLPELR ELRSLFTGKF GNSLELYISK EFVEKLRQYP PSKEMKIQLL HDVAQEFSIE WNSKALEQRL HSPPQLHLEK AKPDLLNDHE
201: DHKNNDVSLF EGKKDTSDAY WRSPRSSTED DNSSLDGHNK ACSSSLGSVS EDETEIKRPF SYNLVPPPYV KQKLKKGESN MNKPTKSEEA LKLPHEDNNT
301: FSDSKTCGTA KLEDSSGKES EKAKKQPQQT KPAEEEEKER TVDGLLMHYT RKQSPHPCFQ HDKGPEMVRR TARHVHPSLP DYDDLLARLA ALKKTTQPA
101: EAIQSLIYAA ARFSDLPELR ELRSLFTGKF GNSLELYISK EFVEKLRQYP PSKEMKIQLL HDVAQEFSIE WNSKALEQRL HSPPQLHLEK AKPDLLNDHE
201: DHKNNDVSLF EGKKDTSDAY WRSPRSSTED DNSSLDGHNK ACSSSLGSVS EDETEIKRPF SYNLVPPPYV KQKLKKGESN MNKPTKSEEA LKLPHEDNNT
301: FSDSKTCGTA KLEDSSGKES EKAKKQPQQT KPAEEEEKER TVDGLLMHYT RKQSPHPCFQ HDKGPEMVRR TARHVHPSLP DYDDLLARLA ALKKTTQPA
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.