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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc05g052960.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G79910.1 Solyc05g052960.2.1 AT2G39760.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400092826 Potato nucleus 74.31 89.18
Solyc03g120120.2.1 Tomato nucleus 49.61 53.15
KRG89505 Soybean mitochondrion 18.43 49.74
Solyc06g066690.2.1 Tomato nucleus 29.61 48.87
GSMUA_Achr5P23530_001 Banana nucleus 16.08 45.81
CDX87282 Canola cytosol 16.47 41.58
KRH23458 Soybean mitochondrion 27.84 35.59
Bra008502.1-P Field mustard nucleus 26.27 35.36
VIT_09s0002g04580.t01 Wine grape nucleus 34.51 35.13
CDY41108 Canola nucleus 25.88 34.92
KRH44367 Soybean mitochondrion 21.96 34.78
CDY37561 Canola nucleus 25.69 34.75
AT1G79910.1 Thale cress nucleus 25.88 34.65
Bra035204.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 11.57 34.1
KRH47048 Soybean mitochondrion 24.9 33.25
GSMUA_Achr6P29590_001 Banana cytosol 26.27 29.26
Solyc02g085830.2.1 Tomato mitochondrion 9.41 23.08
Os02t0159200-01 Rice nucleus 29.02 21.93
EES04550 Sorghum nucleus 29.22 21.82
Zm00001d053852_P001 Maize nucleus 29.02 21.61
Solyc04g007230.2.1 Tomato mitochondrion 13.53 21.36
GSMUA_Achr8P15690_001 Banana mitochondrion 27.84 21.19
GSMUA_Achr9P11280_001 Banana cytosol, mitochondrion, nucleus, plastid 27.65 20.95
TraesCS6B01G161300.1 Wheat cytosol, nucleus, plastid 28.63 20.48
TraesCS6D01G122600.1 Wheat cytosol, nucleus, plastid 28.63 20.42
TraesCS6A01G133000.1 Wheat cytosol, nucleus, plastid 28.43 20.28
Solyc07g022860.2.1 Tomato nucleus 21.37 19.78
Os06t0687000-00 Rice mitochondrion 28.04 19.62
TraesCS7A01G445700.1 Wheat cytosol, mitochondrion, nucleus 27.06 19.46
HORVU6Hr1G025460.3 Barley nucleus 28.04 19.43
KXG20673 Sorghum cytosol, nucleus, plastid 29.41 19.11
TraesCS7D01G433700.1 Wheat cytosol, mitochondrion, nucleus 27.06 19.01
Solyc12g010700.1.1 Tomato cytosol 16.67 18.76
TraesCS7B01G345200.1 Wheat cytosol, nucleus, plastid 26.67 18.71
HORVU7Hr1G101130.3 Barley cytosol, nucleus 26.47 18.59
Zm00001d014521_P001 Maize mitochondrion 26.86 17.77
Solyc02g083130.2.1 Tomato plastid 17.65 16.57
Solyc05g009550.2.1 Tomato mitochondrion 13.33 15.93
Solyc04g072560.2.1 Tomato nucleus, unclear 15.49 14.96
Zm00001d036913_P001 Maize cytosol 10.59 8.84
Solyc07g032230.2.1 Tomato nucleus 17.06 8.11
Zm00001d051744_P001 Maize nucleus 6.86 6.97
Solyc07g054230.2.1 Tomato nucleus 6.08 6.9
Protein Annotations
EnsemblPlants:Solyc12g043150.1.1EnsemblPlantsGene:Solyc12g043150.1Gene3D:1.20.1260.60GO:GO:0006810GO:GO:0008150GO:GO:0015031
InterPro:Ist1PANTHER:PTHR12161PANTHER:PTHR12161:SF14PFAM:PF03398UniParc:UPI00027695A3UniProt:K4DFA2
MapMan:35.2:::::
Description
No Description!
Coordinates
chr12:+:39002390..39004582
Molecular Weight (calculated)
58511.8 Da
IEP (calculated)
9.852
GRAVY (calculated)
-0.942
Length
510 amino acids
Sequence
(BLAST)
001: MFDALLKSKF YTKCKSTIKQ TKTRIEMIRK KRDAMLKYLK NDMADLIKSG ADINAYSRAD GLVVELNISS CYDFLEQYCL HISSHLATMS KQRECPEECR
101: EAVSTLMFSA ARLSDIPELR ELRDIFNERY GNSLECYVNK EIVSKLKSQP SIKDMKLQLM RDIAVESGVR WNSKALEHKL SKPQIAVQDS LMSHSNEEHK
201: LQKKIDESVQ RKEHQKAKIN HENARTHTTS KTKRENHSSH GRKEVPGDVR SLRESDKQIR DNINRASNRY LDDKPPVKDT KADIIGKNGQ RNDPKIIKSV
301: SEEKSDDNTP FYYRPIQPSY NKSRACIVKI SSDTSANVST GKTHGHTEMN QRGITIVKEE DSCVNDTLQK PKPKSVRTRM QPMHDCEEDS HRRLRHGKHG
401: IKIASGDHVD QRDEEEKMMD RLLMHYTRKQ ASKIEVKTPK PVVKLAEVES TEVSRKRSIR VELKQAGPPV ILREGDTQAN RDSLSPNGHI HPKLPDYDDF
501: VTRLAALKGN
Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.