Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | CDX93236 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | CDX93238 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | CDY07031 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | CDY07638 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | CDY61778 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37561 | Canola | nucleus | 97.35 | 97.61 |
| Bra008502.1-P | Field mustard | nucleus | 95.5 | 95.25 |
| CDX87282 | Canola | cytosol | 44.71 | 83.66 |
| AT1G79910.1 | Thale cress | nucleus | 78.31 | 77.69 |
| KRG89505 | Soybean | mitochondrion | 26.45 | 52.91 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 19.84 | 41.9 |
| KRH44367 | Soybean | mitochondrion | 32.28 | 37.89 |
| KRH47048 | Soybean | mitochondrion | 35.19 | 34.82 |
| CDY49898 | Canola | mitochondrion | 25.13 | 34.67 |
| CDX87899 | Canola | nucleus | 24.87 | 34.06 |
| KRH23458 | Soybean | mitochondrion | 35.45 | 33.58 |
| PGSC0003DMT400042551 | Potato | nucleus | 27.25 | 33.33 |
| Solyc06g066690.2.1 | Tomato | nucleus | 26.98 | 33.01 |
| CDX87900 | Canola | mitochondrion | 25.13 | 32.99 |
| CDY52976 | Canola | mitochondrion | 26.72 | 32.69 |
| CDY49897 | Canola | nucleus | 22.49 | 31.72 |
| Solyc03g120120.2.1 | Tomato | nucleus | 38.1 | 30.25 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 36.77 | 27.74 |
| PGSC0003DMT400014529 | Potato | nucleus | 32.8 | 27.56 |
| Solyc12g043150.1.1 | Tomato | nucleus | 34.92 | 25.88 |
| CDX78503 | Canola | mitochondrion | 22.49 | 24.15 |
| CDY04642 | Canola | cytosol | 9.52 | 24.0 |
| CDX70491 | Canola | mitochondrion | 22.49 | 22.43 |
| CDY58595 | Canola | mitochondrion | 19.05 | 22.29 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 26.98 | 22.27 |
| PGSC0003DMT400092826 | Potato | nucleus | 24.87 | 22.12 |
| CDY53122 | Canola | mitochondrion | 18.78 | 21.98 |
| CDX93076 | Canola | mitochondrion | 14.02 | 21.9 |
| CDY22873 | Canola | mitochondrion | 19.58 | 20.67 |
| CDX97673 | Canola | plastid | 13.76 | 20.16 |
| CDY20110 | Canola | nucleus | 12.7 | 20.08 |
| CDY21843 | Canola | nucleus | 12.96 | 20.0 |
| CDX98558 | Canola | plastid | 13.49 | 19.77 |
| CDY33850 | Canola | mitochondrion | 18.78 | 19.56 |
| CDY69937 | Canola | plastid | 21.16 | 19.28 |
| CDY15051 | Canola | cytosol | 8.99 | 19.21 |
| CDY41639 | Canola | plastid | 21.69 | 19.07 |
| CDX75521 | Canola | plastid | 21.43 | 18.71 |
| CDX69159 | Canola | plastid | 21.16 | 18.18 |
| CDX75238 | Canola | nucleus | 29.63 | 17.75 |
| CDX68838 | Canola | nucleus | 28.84 | 17.3 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 31.48 | 16.78 |
| Os02t0159200-01 | Rice | nucleus | 29.63 | 16.59 |
| Zm00001d053852_P001 | Maize | nucleus | 29.63 | 16.35 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 31.22 | 16.25 |
| EES04550 | Sorghum | nucleus | 29.37 | 16.25 |
| CDY21093 | Canola | mitochondrion | 16.93 | 16.2 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 30.42 | 16.13 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 30.69 | 15.98 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 30.69 | 15.96 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 30.16 | 15.94 |
| Os06t0687000-00 | Rice | mitochondrion | 30.69 | 15.91 |
| CDY50176 | Canola | mitochondrion | 16.4 | 15.74 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 29.63 | 15.66 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 30.42 | 15.62 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 31.75 | 15.29 |
| CDY19375 | Canola | mitochondrion | 16.4 | 15.2 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 26.72 | 15.07 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 25.4 | 14.26 |
| Zm00001d014521_P001 | Maize | mitochondrion | 28.04 | 13.75 |
| CDY46461 | Canola | cytosol, mitochondrion, nucleus | 20.37 | 13.6 |
| CDX91784 | Canola | nucleus | 20.63 | 13.45 |
| CDY48635 | Canola | cytosol | 11.64 | 13.13 |
| Zm00001d036913_P001 | Maize | cytosol | 12.17 | 7.53 |
| CDY35879 | Canola | mitochondrion | 17.72 | 7.31 |
| CDX82713 | Canola | mitochondrion | 17.72 | 7.29 |
| CDY43502 | Canola | mitochondrion | 16.4 | 6.63 |
| Zm00001d051744_P001 | Maize | nucleus | 7.41 | 5.58 |
Protein Annotations
| EnsemblPlants:CDY41108 | EnsemblPlantsGene:GSBRNA2T00072447001 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | ProteinID:CDY41108 | ProteinID:CDY41108.1 |
| SEG:seg | UniParc:UPI0004EE4D26 | UniProt:A0A078HWG0 | MapMan:35.2 | : | : |
Description
BnaC05g10990DBnaC05g10990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWG0]
Coordinates
chrLK032490:+:147927..150197
Molecular Weight (calculated)
43124.9 Da
IEP (calculated)
8.581
GRAVY (calculated)
-0.910
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDGLFKPKF YTKCKYLVKI TKTRVETVKR KKNSVCKYLK KDIVDLLNNS LDYNAYGRAE GLIEEKRRLS CYELLEQFCV CVASNVSLLQ KSSKCPEECC
101: EAISSLVYAA ARVSEVPELR DLRSLFADRY GTNSLEQFVN PEFVERFKAE PPSKEMKVKL LQEIAIEYSI KWDAKSLEQR LYTPPPDEEP QKTKTKQNTP
201: GKTRENRRSL SFHGRKDSLD SKSMSRRSED DSMGTSESCV SGPDEEEEDD PENKPFYYRF IMPASYNNKP KIEKQESLPE KMTKSDLLPD DTDSPIAGRP
301: KPRSVRRRLA NPPPPEALGE DSVSSGSSKN MRSESMEKAS GEGLRRMSRR TASWQANPSN NVPNFDEVAA RVDALTRN
101: EAISSLVYAA ARVSEVPELR DLRSLFADRY GTNSLEQFVN PEFVERFKAE PPSKEMKVKL LQEIAIEYSI KWDAKSLEQR LYTPPPDEEP QKTKTKQNTP
201: GKTRENRRSL SFHGRKDSLD SKSMSRRSED DSMGTSESCV SGPDEEEEDD PENKPFYYRF IMPASYNNKP KIEKQESLPE KMTKSDLLPD DTDSPIAGRP
301: KPRSVRRRLA NPPPPEALGE DSVSSGSSKN MRSESMEKAS GEGLRRMSRR TASWQANPSN NVPNFDEVAA RVDALTRN
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.