CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46461	Canola	cytosol, mitochondrion, nucleus	94.31	96.64
Bra036745.1-P	Field mustard	nucleus	94.14	96.47
AT1G34220.1	Thale cress	nucleus	76.55	68.41
KRH70215	Soybean	nucleus	50.34	54.38
KRH08570	Soybean	nucleus	49.31	54.17
VIT_18s0164g00040.t01	Wine grape	nucleus	50.17	53.99
Solyc04g072560.2.1	Tomato	nucleus, unclear	48.28	53.03
PGSC0003DMT400070850	Potato	cytosol	48.28	53.03
CDY04642	Canola	cytosol	13.1	50.67
CDY48635	Canola	cytosol	28.62	49.55
KRH35011	Soybean	mitochondrion	32.24	48.07
GSMUA_Achr5P23420_001	Banana	mitochondrion	39.83	47.14
KXG24567	Sorghum	cytosol, plastid	40.86	45.93
TraesCS3B01G498800.1	Wheat	cytosol	40.0	45.4
TraesCS3D01G451700.1	Wheat	cytosol	39.83	45.12
HORVU3Hr1G098720.3	Barley	cytosol	39.83	45.03
TraesCS3A01G459100.1	Wheat	cytosol, plastid	39.66	44.75
CDY58595	Canola	mitochondrion	24.83	44.58
CDY53122	Canola	mitochondrion	24.48	43.96
GSMUA_Achr6P02830_001	Banana	cytosol	43.97	43.37
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	40.34	42.86
Os08t0175200-01	Rice	nucleus	40.34	41.71
Zm00001d024425_P003	Maize	cytosol	40.69	41.62
CDY69937	Canola	plastid	25.86	36.14
CDX75521	Canola	plastid	26.9	36.03
CDX69159	Canola	plastid	27.24	35.91
CDY41639	Canola	plastid	26.21	35.35
CDX87282	Canola	cytosol	11.03	31.68
CDY49898	Canola	mitochondrion	11.55	24.45
CDY49897	Canola	nucleus	11.21	24.25
CDX87899	Canola	nucleus	11.21	23.55
CDY52976	Canola	mitochondrion	12.41	23.3
CDY20110	Canola	nucleus	9.48	23.01
CDY21093	Canola	mitochondrion	15.52	22.78
CDY50176	Canola	mitochondrion	15.34	22.59
CDX87900	Canola	mitochondrion	11.21	22.57
CDY19375	Canola	mitochondrion	15.69	22.3
CDY21843	Canola	nucleus	9.31	22.04
CDY41108	Canola	nucleus	13.45	20.63
CDY37561	Canola	nucleus	13.28	20.42
CDX78503	Canola	mitochondrion	12.24	20.17
CDX93076	Canola	mitochondrion	8.1	19.42
CDX98558	Canola	plastid	8.62	19.38
CDX97673	Canola	plastid	8.62	19.38
CDY22873	Canola	mitochondrion	11.9	19.27
CDX70491	Canola	mitochondrion	12.59	19.26
CDY33850	Canola	mitochondrion	11.9	19.01
CDX82713	Canola	mitochondrion	27.76	17.52
CDY35879	Canola	mitochondrion	27.41	17.34
CDY43502	Canola	mitochondrion	27.24	16.9
CDY15051	Canola	cytosol	5.0	16.38
CDX68838	Canola	nucleus	13.45	12.38
CDX75238	Canola	nucleus	13.45	12.36

Protein Annotations

EnsemblPlants:CDX91784	EnsemblPlantsGene:GSBRNA2T00153358001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5	PFAM:PF03398	ProteinID:CDX91784
ProteinID:CDX91784.1	SEG:seg	UniParc:UPI0004EB73C5	MapMan:35.2	:	:

Description

BnaC08g07030D

Coordinates

chrLK031869:+:1348181..1350521

Molecular Weight (calculated)

64663.0 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.741

Length

580 amino acids

Sequence
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MLAAQEIIEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQLLFF SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAQEHQ LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KVPLKEEQDK GSHLTMLSLS RPEEQRQSDS DSEYEELDFP EVPNVLLRPT PAATPESAAK PAATCEHTSL DLPFDSESAG EDNLASKRDE
301: HTAKASSTVV EGQTESDPVK QNSYSPPPVG VVGSFSTNES DAPKKISDLD LQDVLTAAQA AADSAERAAA AARSAASLAQ LRINELTKKT PEQSPESLIE
401: NPFYSSPPQQ TMEKAQFDHQ NSSVSSYGDH TEFQKEESSS LFSHQTERLP SMEKPQFDHQ NSPASSYGDL TDFQLGDYSS PFNHDRNNHH QAGRLPSFEK
501: TRFDHLNSSV SSYGDVTELQ RPENSSFDRL TPGQDHQQMR LPSREDDPYY SYPNLFTSQN LDRSPGSRSF SDTSKPAHDS

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.