CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78503	Canola	mitochondrion	86.02	92.61
AT2G14830.1	Thale cress	mitochondrion	66.49	65.62
CDY22873	Canola	mitochondrion	43.8	46.37
VIT_12s0059g01700.t01	Wine grape	golgi	28.5	46.35
CDY33850	Canola	mitochondrion	43.54	45.45
CDX87282	Canola	cytosol	16.62	31.19
CDY04642	Canola	cytosol	11.87	30.0
Solyc12g010700.1.1	Tomato	cytosol	32.98	27.59
KRH70127	Soybean	mitochondrion, nucleus	25.33	25.26
CDX87899	Canola	nucleus	17.68	24.28
CDX97673	Canola	plastid	16.36	24.03
CDX98558	Canola	plastid	16.36	24.03
CDY52976	Canola	mitochondrion	19.53	23.95
PGSC0003DMT400020212	Potato	cytosol	24.54	23.54
CDY49897	Canola	nucleus	16.62	23.51
CDY20110	Canola	nucleus	14.78	23.43
CDY21843	Canola	nucleus	14.78	22.86
CDY41108	Canola	nucleus	22.43	22.49
CDY37561	Canola	nucleus	22.16	22.28
CDY49898	Canola	mitochondrion	16.09	22.26
KRH26928	Soybean	nucleus	37.47	21.42
KRH22410	Soybean	mitochondrion, nucleus	37.2	21.17
CDX87900	Canola	mitochondrion	15.57	20.49
CDX93076	Canola	mitochondrion	12.93	20.25
CDY58595	Canola	mitochondrion	16.89	19.81
CDY53122	Canola	mitochondrion	16.89	19.81
CDY41639	Canola	plastid	21.64	19.07
CDY69937	Canola	plastid	20.58	18.8
PGSC0003DMT400047266	Potato	nucleus	26.91	18.75
CDX75521	Canola	plastid	20.84	18.24
CDY15051	Canola	cytosol	8.44	18.08
CDX69159	Canola	plastid	20.84	17.95
CDY50176	Canola	mitochondrion	16.89	16.24
CDY21093	Canola	mitochondrion	16.89	16.2
CDY19375	Canola	mitochondrion	17.15	15.93
CDY48635	Canola	cytosol	12.66	14.33
CDX75238	Canola	nucleus	21.9	13.15
CDY46461	Canola	cytosol, mitochondrion, nucleus	19.53	13.07
CDX68838	Canola	nucleus	21.37	12.86
CDX91784	Canola	nucleus	19.26	12.59
Solyc07g054230.2.1	Tomato	nucleus	13.98	11.8
CDY43502	Canola	mitochondrion	20.05	8.13
CDY35879	Canola	mitochondrion	18.73	7.74
CDX82713	Canola	mitochondrion	18.47	7.62

Protein Annotations

EnsemblPlants:CDX70491	EnsemblPlantsGene:GSBRNA2T00140319001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF18	PFAM:PF03398	ProteinID:CDX70491
ProteinID:CDX70491.1	SEG:seg	UniParc:UPI0004EB7DBC	MapMan:35.2	:	:

Description

BnaC03g05750D

Coordinates

chrLK031791:+:677709..679010

Molecular Weight (calculated)

44205.6 Da

IEP (calculated)

10.196

GRAVY (calculated)

-0.591

Length

379 amino acids

Sequence
(BLAST)

001: MKPHSLLQTL KSSSLKLVRY IRTEKQTMFG FLFGWRKASK CKRALKQLQR RLNLLENKKH AISSHLRHDI VQLLRIGERD RALRRAHDLF LDENLVSLYH
101: LLLQFSDVIL LNLSYIRRHR ELSDGVNEAV STLIFASARC GDLPELRTLR ALFGERYGKL LVSMALYLLP GNRVNPQIIE KLSRISVSDD AKSKLLAEIA
201: AEFGLSLHVL ALEYTPESHK EAESEAEVYK FTLTDADLEV KQEESLSKPS REKIKVCDEY DCIEEQVVGK DQRIFRFIES KEETRQKKRS RRRSARSSPM
301: AKDVECWRYY NMGNKRRQKK GSCQCYHIVY NVFTMRPDQK VKGERGLKEA KHVHPKLPDY DQLAAHFTAL RKQHQQQVP

Best Arabidopsis Sequence Match ( AT2G14830.1 )
(BLAST)

001: MFCFLFGWRR TSKCKSVVKQ LQCRLNLLKN KKYAISSHLR NDIAQLLRIG ERDRALHRAQ QLFLDENLMS LYHLLLHFSD IILLNLSYIR RRRDLPDGIN
101: EAVSTLVFAS ARCGDLPELR ALRVLFGKRY GNHFVDTALN LLPGNCVNPQ VIEKLSIISV SDDAKSKLLG EIVEEYNLRL EVLAIEYTPE FHKQVLKSEK
201: AEEEKEVMSS NSAQPYCSSQ KAESEAEVYK FTLTDADIEE NQEQERKVCD EEDDCIEEEV VEEDQSVFRF RESTEDERKE RKRLRRKPRS TSSSSSPIAK
301: DVDCWRYYYK GKRSRQRKEC GKCCYHIVYN VFTMLPDQKE SEEGERSFKK AMHVHPKLPD YDQIVAHFTA LRKQQQQKQK HMRS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:TAIR;Acc:AT2G14830]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.