Factsheet for PGSC0003DMT400020212

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010700.1.1	Tomato	cytosol	83.54	72.85
VIT_12s0059g01700.t01	Wine grape	golgi	22.28	37.77
PGSC0003DMT400047266	Potato	nucleus	48.1	34.93
CDX78503	Canola	mitochondrion	23.8	26.7
CDY22873	Canola	mitochondrion	23.8	26.26
Bra006177.1-P	Field mustard	mitochondrion	23.04	25.85
AT2G14830.1	Thale cress	mitochondrion	24.81	25.52
CDY33850	Canola	mitochondrion	23.29	25.34
CDX70491	Canola	mitochondrion	23.54	24.54
PGSC0003DMT400032356	Potato	cytosol, mitochondrion	15.44	23.19
KRH70127	Soybean	mitochondrion, nucleus	21.01	21.84
KRH26928	Soybean	nucleus	34.68	20.66
KRH22410	Soybean	mitochondrion, nucleus	34.43	20.42
PGSC0003DMT400042551	Potato	nucleus	14.94	19.09
PGSC0003DMT400014529	Potato	nucleus	17.72	15.56
PGSC0003DMT400032944	Potato	mitochondrion	7.85	14.9
PGSC0003DMT400092826	Potato	nucleus	14.18	13.18
PGSC0003DMT400003908	Potato	plastid	16.2	13.09
AT1G51900.1	Thale cress	mitochondrion	22.78	11.63
PGSC0003DMT400033769	Potato	mitochondrion	12.41	11.48
PGSC0003DMT400070850	Potato	cytosol	15.19	11.36
PGSC0003DMT400022180	Potato	nucleus	12.91	9.24
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	16.2	5.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400020212	EnsemblPlantsGene:PGSC0003DMG400007812	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF18	PFAM:PF03398	PGSC:PGSC0003DMG400007812
UniParc:UPI000296D0B2	UniProt:M1AD41	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007812]

Coordinates

chr12:+:1648830..1650633

Molecular Weight (calculated)

45296.2 Da

IEP (calculated)

6.275

GRAVY (calculated)

-0.448

Length

395 amino acids

Sequence
(BLAST)

001: MLVVYDLLEN FCEFILISLP YIRRHKDCPN DINEAVSSLV FASTRLGNLP ELPVIRKLFG QRYGKKFETS ALELLPGNLV NYQIKENLCI KSVSNEVKYK
101: LVDEIARICF QQGPLLLEYR NEQQEQVHNR VDDAQIGYKT GSKNSNIATE ANIVSIDYSS EIEGTSTDYL SAIEQTSIDS VHCMKNNEQK RVSNPTRCSN
201: YSSQSTISSP ELVMKREFWR TNGFISGKMT DQLAYKDDVE EFESILSKDL NFQDQRLFMF KGPLCPLMLK MDTDHINVSI SPLQKTRLIA MKDASFMTDD
301: LESCSFTFSL SSAMTRGQLY MRTRTMPVER PKDNLADNFL RSNLFPVLQD PGEESSLKSY VHPKLPDYDE IAAMFKALKK EKLQAERNLR SIHNK

Best Arabidopsis Sequence Match ( AT2G14830.1 )
(BLAST)

001: MFCFLFGWRR TSKCKSVVKQ LQCRLNLLKN KKYAISSHLR NDIAQLLRIG ERDRALHRAQ QLFLDENLMS LYHLLLHFSD IILLNLSYIR RRRDLPDGIN
101: EAVSTLVFAS ARCGDLPELR ALRVLFGKRY GNHFVDTALN LLPGNCVNPQ VIEKLSIISV SDDAKSKLLG EIVEEYNLRL EVLAIEYTPE FHKQVLKSEK
201: AEEEKEVMSS NSAQPYCSSQ KAESEAEVYK FTLTDADIEE NQEQERKVCD EEDDCIEEEV VEEDQSVFRF RESTEDERKE RKRLRRKPRS TSSSSSPIAK
301: DVDCWRYYYK GKRSRQRKEC GKCCYHIVYN VFTMLPDQKE SEEGERSFKK AMHVHPKLPD YDQIVAHFTA LRKQQQQKQK HMRS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:TAIR;Acc:AT2G14830]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.