Factsheet for PGSC0003DMT400032944

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085830.2.1	Tomato	mitochondrion	94.23	94.23
VIT_14s0006g03050.t01	Wine grape	mitochondrion	45.19	60.26
TraesCS4D01G219500.2	Wheat	mitochondrion	31.25	35.33
HORVU4Hr1G062250.1	Barley	mitochondrion	30.77	34.78
TraesCS4B01G219300.1	Wheat	mitochondrion	30.29	34.24
EER92528	Sorghum	mitochondrion	29.81	33.33
TraesCS4A01G084900.2	Wheat	mitochondrion	28.37	32.6
Zm00001d028457_P001	Maize	mitochondrion	30.77	32.0
Os03t0257500-01	Rice	mitochondrion	28.85	31.09
Zm00001d034058_P004	Maize	mitochondrion	27.4	30.0
PGSC0003DMT400033769	Potato	mitochondrion	55.77	27.17
Zm00001d034057_P001	Maize	mitochondrion	27.88	25.33
TraesCS4B01G219400.1	Wheat	mitochondrion	30.77	24.24
Zm00001d047887_P001	Maize	mitochondrion	28.85	24.1
Zm00001d047886_P001	Maize	mitochondrion	28.85	24.0
Zm00001d047885_P001	Maize	mitochondrion	28.85	24.0
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	48.56	23.71
TraesCS4D01G219800.1	Wheat	mitochondrion	30.77	22.78
OQU90964	Sorghum	mitochondrion	18.27	22.75
Zm00001d033714_P001	Maize	mitochondrion	37.98	22.51
KRH46919	Soybean	mitochondrion	44.23	22.44
TraesCS4A01G084800.1	Wheat	mitochondrion	30.29	22.34
Os03t0710000-01	Rice	plasma membrane	37.98	22.25
HORVU4Hr1G062260.2	Barley	plastid	30.29	22.11
EER93588	Sorghum	mitochondrion	36.06	21.93
KRH01764	Soybean	mitochondrion	44.23	20.81
TraesCS4D01G044400.1	Wheat	mitochondrion	34.62	20.45
GSMUA_Achr6P24100_001	Banana	mitochondrion	47.12	20.04
TraesCS4D01G044800.1	Wheat	mitochondrion	33.17	19.94
TraesCS4B01G044800.1	Wheat	mitochondrion	32.21	19.94
TraesCS4B01G045100.1	Wheat	mitochondrion	33.65	19.83
GSMUA_Achr10P...	Banana	mitochondrion	45.67	19.63
TraesCS4A01G269300.1	Wheat	mitochondrion	33.17	19.49
Zm00001d047884_P001	Maize	cytosol	10.1	14.69
PGSC0003DMT400042551	Potato	nucleus	20.19	13.59
PGSC0003DMT400003908	Potato	plastid	30.77	13.09
PGSC0003DMT400032356	Potato	cytosol, mitochondrion	16.35	12.93
Zm00001d028456_P001	Maize	mitochondrion	32.21	12.62
EER92527	Sorghum	mitochondrion, plastid	32.21	12.5
Os03t0257600-01	Rice	mitochondrion	31.73	12.22
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	30.77	11.96
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	30.77	11.85
HORVU4Hr1G062110.1	Barley	mitochondrion	30.29	11.5
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	28.85	11.07
PGSC0003DMT400070850	Potato	cytosol	27.88	10.98
PGSC0003DMT400014529	Potato	nucleus	22.6	10.44
PGSC0003DMT400092826	Potato	nucleus	17.79	8.71
PGSC0003DMT400020212	Potato	cytosol	14.9	7.85
PGSC0003DMT400047266	Potato	nucleus	17.31	6.62
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	30.77	5.9
PGSC0003DMT400022180	Potato	nucleus	12.98	4.89

Protein Annotations

EnsemblPlants:PGSC0003DMT400032944	EnsemblPlantsGene:PGSC0003DMG400012655	EntrezGene:102604927	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF16	PFAM:PF03398	PGSC:PGSC0003DMG400012655
RefSeq:XP_006363122.1	UniParc:UPI000294869D	UniProt:M1AYC8	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012655]

Coordinates

chr2:-:41058549..41060099

Molecular Weight (calculated)

23420.2 Da

IEP (calculated)

7.419

GRAVY (calculated)

-0.424

Length

208 amino acids

Sequence
(BLAST)

001: MGLFGRKFKA SKVTTLANLA ISRISILKKQ HQVRCSLSRS DVTQLLNLSR QEDALHRVEL VIKEQNTVDA LTMMEKYCHL LIEKKVLIKT KGECPEELAE
101: AISSLIYAAS RWGEFPELHE LREIFTSRYG NEFAAQCVEL RNNCSVQPKM IPKLSRHHTG SGKRRDMLND IAADCGINLC AEDETCHISQ SKPEVNSENE
201: CAKGEEGS

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.