Factsheet for TraesCS4D01G219400.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	92.59	92.25
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	90.93	91.78
HORVU4Hr1G062110.1	Barley	mitochondrion	87.78	86.5
EER92527	Sorghum	mitochondrion, plastid	62.04	62.5
Os03t0257600-01	Rice	mitochondrion	62.04	62.04
Zm00001d028456_P001	Maize	mitochondrion	60.19	61.21
TraesCS4D01G219500.2	Wheat	mitochondrion	20.37	59.78
TraesCS4D01G219800.1	Wheat	mitochondrion	24.07	46.26
VIT_14s0006g03050.t01	Wine grape	mitochondrion	12.59	43.59
TraesCS4D01G044800.1	Wheat	mitochondrion	24.44	38.15
TraesCS4D01G044400.1	Wheat	mitochondrion	23.15	35.51
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	25.93	32.86
KRH45249	Soybean	mitochondrion	22.96	31.31
Solyc02g085830.2.1	Tomato	mitochondrion	12.04	31.25
PGSC0003DMT400033769	Potato	mitochondrion	24.44	30.91
PGSC0003DMT400032944	Potato	mitochondrion	11.85	30.77
Solyc05g009550.2.1	Tomato	mitochondrion	23.89	30.21
KRH75395	Soybean	mitochondrion	21.85	29.28
GSMUA_Achr6P24100_001	Banana	mitochondrion	26.3	29.04
VIT_01s0011g03330.t01	Wine grape	mitochondrion	24.44	28.21
GSMUA_Achr10P...	Banana	mitochondrion	24.63	27.48
CDY50176	Canola	mitochondrion	20.0	27.41
CDY21093	Canola	mitochondrion	19.81	27.09
CDY19375	Canola	mitochondrion	19.63	25.98
AT1G13340.1	Thale cress	mitochondrion	19.26	25.43
KRH46919	Soybean	mitochondrion	19.26	25.37
KRH01764	Soybean	mitochondrion	20.37	24.89
TraesCS3D01G263400.1	Wheat	mitochondrion, plastid	13.7	23.2
Bra019826.1-P	Field mustard	mitochondrion	20.19	22.06
TraesCS5D01G353300.1	Wheat	mitochondrion	17.22	19.29
TraesCS3D01G451700.1	Wheat	cytosol	15.74	16.6
Bra016733.1-P	Field mustard	mitochondrion	19.81	14.32
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	13.15	9.93
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	13.33	9.92
TraesCS3D01G253500.1	Wheat	nucleus	16.11	7.79

Protein Annotations

EnsemblPlants:TraesCS4D01G219400.3	EnsemblPlantsGene:TraesCS4D01G219400	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF17	PFAM:PF03398	SEG:seg	MapMan:35.2

Description

No Description!

Coordinates

chr4D:+:374831463..374833577

Molecular Weight (calculated)

58664.7 Da

IEP (calculated)

10.079

GRAVY (calculated)

-0.766

Length

540 amino acids

Sequence
(BLAST)

001: MGFFTKSTSK QTAKLKSLVK LAVARLAVVR RPRLGRRSIA RGDVAQLLSI GHLDRALARA EQVMEEDSML EGLDIIEHYC KILVEHSAQL EKPKECGEEI
101: KAAAAGLIFA SARCGELPEL LDARAILASK FGREFERAAK EGSQVVVNPT LVQRLSGQKA SAEQQRRLAR EIAAENGILL DFPDSPGEVH QSKQSEQAKN
201: VPAPAPAGKS VEQFEVRTET SEVQRRQRLA DDNMSRPNLA RQRAEEKASR ESKKYDDVRM AAEAAFESAS FAAMAARAAV ELSRTESQGK GPRGGGRGHD
301: KVHPLQSSGA TERETRPPGR PQKPPSPSPS PSWSDKSTVS SVWSDAPARD APSPPKGKSI VFDRSDGEDD DVVEDLVWTP QLQRQHNRRT VSAMGMDGGG
401: GNTHGARRSE FQDSVPSGSE DARPAHRRYA SEHAGGGAHR EAQEQPGQYR APPYRRSPVA DAASNGGAYE SSAFVARAPY GRITSALEGG NKHIARHEEV
501: RRMGTDARVL QEQVYGSAAP GPGRVPLTPD RRAISVRTRR

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.