CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028456_P001	Maize	mitochondrion	84.51	85.31
EER92528	Sorghum	mitochondrion	22.95	66.13
Os03t0257600-01	Rice	mitochondrion	65.3	64.81
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	61.94	62.06
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	62.5	62.04
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	62.5	61.81
HORVU4Hr1G062110.1	Barley	mitochondrion	62.5	61.13
OQU90964	Sorghum	mitochondrion	16.42	52.69
VIT_14s0006g03050.t01	Wine grape	mitochondrion	13.06	44.87
EER93588	Sorghum	mitochondrion	24.07	37.72
Solyc02g085830.2.1	Tomato	mitochondrion	12.69	32.69
PGSC0003DMT400032944	Potato	mitochondrion	12.5	32.21
KRH45249	Soybean	mitochondrion	23.51	31.82
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	25.19	31.69
PGSC0003DMT400033769	Potato	mitochondrion	24.81	31.15
Solyc05g009550.2.1	Tomato	mitochondrion	24.44	30.68
GSMUA_Achr6P24100_001	Banana	mitochondrion	27.8	30.47
KRH75395	Soybean	mitochondrion	22.76	30.27
GSMUA_Achr10P...	Banana	mitochondrion	26.12	28.93
VIT_01s0011g03330.t01	Wine grape	mitochondrion	24.81	28.42
CDY21093	Canola	mitochondrion	20.71	28.1
CDY50176	Canola	mitochondrion	20.52	27.92
AT1G13340.1	Thale cress	mitochondrion	20.52	26.89
CDY19375	Canola	mitochondrion	20.34	26.72
KXG33152	Sorghum	mitochondrion	15.67	26.17
KRH46919	Soybean	mitochondrion	19.96	26.1
KRH01764	Soybean	mitochondrion	21.46	26.02
KXG19452	Sorghum	mitochondrion	12.13	23.64
Bra019826.1-P	Field mustard	mitochondrion	21.08	22.87
EER99304	Sorghum	plastid	16.42	18.33
KXG24567	Sorghum	cytosol, plastid	16.98	17.64
Bra016733.1-P	Field mustard	mitochondrion	20.71	14.86
EES04550	Sorghum	nucleus	13.25	10.4
KXG20673	Sorghum	cytosol, nucleus, plastid	13.25	9.04
EES03498	Sorghum	nucleus, plastid	16.6	7.19

Protein Annotations

EnsemblPlants:EER92527	EnsemblPlantsGene:SORBI_3001G431800	EntrezGene:8078832	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF17	PFAM:PF03398
ProteinID:EER92527	ProteinID:EER92527.1	RefSeq:XP_002465529.1	SEG:seg	UniParc:UPI0001A82653	UniProt:C5WQT6
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:71073343..71077101

Molecular Weight (calculated)

58033.2 Da

IEP (calculated)

10.027

GRAVY (calculated)

-0.629

Length

536 amino acids

Sequence
(BLAST)

001: MGLFGKSTSK QTAKLKSLVK LAVARLAVAR RPRLGRRSIA RSDVGQLLSI GHLDRALIRA EQVIEEDNML EALDVIELYC KILIEQAAQL EKPKECSEEI
101: KEAAAGLMFA SARCGELPEL LDARAILADK FGRDFARAAK EGAHGVVDPM LVRKLSGERA SLEQKRRLAK EIAAENDILL EFPASPGEVH QDGRTTSRIN
201: SQRASEQTKK APGRAFVVES AVKTDRLEVE RNSVNGKVNP SLAQLSLDDK VLRESKKYSD ARMAAEAAFA SAKFAAMAAR AAVELSRSES LGKGSRGRGY
301: DKVPSVQTTA ATEQGTAPPS WRPHKSPSPS PSWSDRSTAT SVGSDVAHKG KEVAFDQSDG ELEDQVTEDL VWPPSQRRAS YRRTASTVGT GVGPWYGDAG
401: STGAPGNNTL PHARPQHRRH ATEFAAGNAL GGGQRGQYVA PPYRRTSTAS TGRDSDAARD DGGAYESSSY VHPPYSRMVS ALERSNEHIA RHEEVRRMGT
501: DARALQERVY GAAPGQGQGH GPLDLERRAI SVRTRR

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.