Factsheet for GSMUA_Achr6P07700_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g03050.t01	Wine grape	mitochondrion	23.94	65.38
GSMUA_Achr6P24100_001	Banana	mitochondrion	62.91	54.81
GSMUA_Achr10P...	Banana	mitochondrion	57.51	50.62
PGSC0003DMT400032944	Potato	mitochondrion	23.71	48.56
Solyc02g085830.2.1	Tomato	mitochondrion	23.47	48.08
TraesCS4D01G219500.2	Wheat	mitochondrion	20.19	46.74
Os03t0710000-01	Rice	plasma membrane	38.5	46.2
EER93588	Sorghum	mitochondrion	36.85	45.91
TraesCS4B01G219300.1	Wheat	mitochondrion	19.72	45.65
Os03t0257500-01	Rice	mitochondrion	20.42	45.08
Zm00001d033714_P001	Maize	mitochondrion	36.85	44.73
TraesCS4A01G084900.2	Wheat	mitochondrion	18.78	44.2
EER92528	Sorghum	mitochondrion	19.25	44.09
HORVU4Hr1G062250.1	Barley	mitochondrion	19.01	44.02
TraesCS4D01G044800.1	Wheat	mitochondrion	34.27	42.2
TraesCS4B01G044800.1	Wheat	mitochondrion	33.1	41.96
TraesCS4B01G045100.1	Wheat	mitochondrion	34.04	41.08
TraesCS4A01G269300.1	Wheat	mitochondrion	34.04	40.96
Zm00001d034058_P004	Maize	mitochondrion	18.08	40.53
Solyc05g009550.2.1	Tomato	mitochondrion	40.38	40.28
PGSC0003DMT400033769	Potato	mitochondrion	40.14	40.05
Zm00001d028457_P001	Maize	mitochondrion	18.78	40.0
KRH45249	Soybean	mitochondrion	36.62	39.39
TraesCS4D01G044400.1	Wheat	mitochondrion	32.16	38.92
KRH75395	Soybean	mitochondrion	36.62	38.71
TraesCS4B01G219400.1	Wheat	mitochondrion	22.07	35.61
VIT_01s0011g03330.t01	Wine grape	mitochondrion	38.73	35.26
HORVU4Hr1G062260.2	Barley	plastid	23.0	34.39
CDY21093	Canola	mitochondrion	31.69	34.18
Zm00001d047887_P001	Maize	mitochondrion	19.72	33.73
Zm00001d034057_P001	Maize	mitochondrion	18.08	33.62
Zm00001d047886_P001	Maize	mitochondrion	19.72	33.6
CDY50176	Canola	mitochondrion	30.99	33.5
CDY19375	Canola	mitochondrion	31.92	33.33
TraesCS4D01G219800.1	Wheat	mitochondrion	21.83	33.1
Zm00001d047885_P001	Maize	mitochondrion	19.25	32.8
TraesCS4A01G084800.1	Wheat	mitochondrion	21.36	32.27
AT1G13340.1	Thale cress	mitochondrion	30.52	31.78
OQU90964	Sorghum	mitochondrion	11.97	30.54
KRH46919	Soybean	mitochondrion	27.93	29.02
Bra019826.1-P	Field mustard	mitochondrion	32.39	27.94
KRH01764	Soybean	mitochondrion	28.87	27.83
GSMUA_Achr3P29510_001	Banana	mitochondrion	21.13	27.61
GSMUA_Achr5P23530_001	Banana	nucleus	11.5	27.37
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	32.86	25.93
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	32.39	25.79
GSMUA_Achr9P21370_001	Banana	mitochondrion	19.48	25.38
HORVU4Hr1G062110.1	Barley	mitochondrion	32.63	25.36
EER92527	Sorghum	mitochondrion, plastid	31.69	25.19
Zm00001d047884_P001	Maize	cytosol	8.45	25.17
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	30.75	24.17
Zm00001d028456_P001	Maize	mitochondrion	29.58	23.73
Os03t0257600-01	Rice	mitochondrion	29.81	23.52
GSMUA_Achr5P23420_001	Banana	mitochondrion	24.18	21.02
GSMUA_Achr3P26880_001	Banana	mitochondrion	20.89	20.6
Bra016733.1-P	Field mustard	mitochondrion	31.69	18.07
GSMUA_Achr6P02830_001	Banana	cytosol	24.65	17.86
GSMUA_Achr6P29590_001	Banana	cytosol	14.08	13.1
GSMUA_Achr8P15690_001	Banana	mitochondrion	14.32	9.1
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	13.62	8.62
GSMUA_Achr1P14380_001	Banana	nucleus	25.12	8.59

Protein Annotations

EnsemblPlants:GSMUA_Achr6P07700_001	EnsemblPlants:GSMUA_Achr6T07700_001	EnsemblPlantsGene:GSMUA_Achr6G07700_001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF16	PFAM:PF03398	SEG:seg
UniParc:UPI0002958F5D	UniProt:M0T519	MapMan:35.2	:	:	:

Description

DUF292 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G07700_001]

Coordinates

chr6:-:5208780..5210932

Molecular Weight (calculated)

47461.9 Da

IEP (calculated)

6.389

GRAVY (calculated)

-0.669

Length

426 amino acids

Sequence
(BLAST)

001: MRSPKALFLS LCSYTHTIFP KEPALGRKEA EMGRKLDALL GRKSRQMSKL KTLLGLTVSR LAVLRNRRQV RCNQARTDVA QLLQLGHVDH ALLRVEHVIK
101: EQNMVDVFVM SEHYCQLLIE RFVLLDHKEC PEELREAISS LSFAASRCAE LPELDKARGI FSSRYGKELV SAAVELRNNC RVNPKMIQKL STRQPSLEIR
201: QRVTKEIAAE TGINLDFYDP SSEDAGGDPP VNLVQEQLKS DENLSMRTPH KYEDVASAAK DAFEAAAFAA AAARAAVELC RSESQGRGSD PDTESGGQSR
301: FEEVEEPKAA ASVDNSGDQI HCSDSEEEIE AEQHDLLGED RFKEKFVKQF RRPPSWSSDS SEEEDGRLHA SLGGGSPDEH PEAYLGPSYS RGNERSNPPH
401: KAKTELKSGT EGKKAISVRT RRGLFE

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.