Factsheet for TraesCS4B01G219200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	92.25	92.59
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	90.04	91.22
HORVU4Hr1G062110.1	Barley	mitochondrion	87.45	86.5
Os03t0257600-01	Rice	mitochondrion	62.55	62.78
EER92527	Sorghum	mitochondrion, plastid	61.81	62.5
Zm00001d028456_P001	Maize	mitochondrion	60.15	61.39
TraesCS4B01G219300.1	Wheat	mitochondrion	19.0	55.98
TraesCS4B01G219400.1	Wheat	mitochondrion	23.06	47.35
VIT_14s0006g03050.t01	Wine grape	mitochondrion	11.99	41.67
TraesCS4B01G045100.1	Wheat	mitochondrion	23.62	36.26
TraesCS4B01G044800.1	Wheat	mitochondrion	22.32	36.01
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	24.17	30.75
KRH45249	Soybean	mitochondrion	22.14	30.3
PGSC0003DMT400033769	Potato	mitochondrion	23.62	29.98
Solyc02g085830.2.1	Tomato	mitochondrion	11.44	29.81
Solyc05g009550.2.1	Tomato	mitochondrion	23.06	29.27
PGSC0003DMT400032944	Potato	mitochondrion	11.07	28.85
GSMUA_Achr6P24100_001	Banana	mitochondrion	25.65	28.43
KRH75395	Soybean	mitochondrion	21.03	28.29
CDY50176	Canola	mitochondrion	20.11	27.66
VIT_01s0011g03330.t01	Wine grape	mitochondrion	23.62	27.35
CDY21093	Canola	mitochondrion	19.93	27.34
GSMUA_Achr10P...	Banana	mitochondrion	23.43	26.24
CDY19375	Canola	mitochondrion	19.56	25.98
AT1G13340.1	Thale cress	mitochondrion	19.0	25.18
KRH46919	Soybean	mitochondrion	18.45	24.39
KRH01764	Soybean	mitochondrion	19.56	23.98
TraesCS3B01G296700.1	Wheat	mitochondrion, plastid	13.28	22.57
Bra019826.1-P	Field mustard	mitochondrion	20.3	22.27
TraesCS5B01G347800.1	Wheat	mitochondrion	16.42	18.39
TraesCS3B01G498800.1	Wheat	cytosol	15.5	16.44
Bra016733.1-P	Field mustard	mitochondrion	19.93	14.46
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	12.92	9.82
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	12.73	9.49
TraesCS3B01G284600.1	Wheat	nucleus	16.24	7.92
TraesCS3B01G288900.2	Wheat	plastid	16.05	7.55

Protein Annotations

EnsemblPlants:TraesCS4B01G219200.1	EnsemblPlantsGene:TraesCS4B01G219200	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF17	PFAM:PF03398	SEG:seg	MapMan:35.2

Description

No Description!

Coordinates

chr4B:+:461734576..461736696

Molecular Weight (calculated)

58842.8 Da

IEP (calculated)

9.998

GRAVY (calculated)

-0.785

Length

542 amino acids

Sequence
(BLAST)

001: MGFFTKSTSK QTAKLKSLIK IAVARLAVVR RPRLGRRSIA RGDVAQLLSI GHLDRALARA GQVMEEDSML EALDIIEHYC KILVDQSAQL EKPKECGDEI
101: KAAAAGLIFA SARCGELPEL LDARAILASK FGREFERAAK EGSQAVVNPT LVQRLSGEKA SAGQQRRLAR EIAAENDILL DFPESRGEVH QSKQSEQAKN
201: VPAPAGKSVE QPEVRTETSE VQRRQRLADD NVSRSNLARQ RAEEKASRES KKYDDVRMAA EAAFESASFA AMAARAAVEL SRTESHGKGP RGGGRGHDKV
301: HPLQSSGATE RETRPPGKPQ KPPSPSPSPS WSDKSTVSSV WSDAPARDAP SPPKGKSIVF DRSDGEDDDV VEDLVWTPQL RRPPYNNRRT ASAMGMDGVG
401: GDDNTHGARR AEFQDSVPNG SEDARPTHRR HASEHAGGGV RREAPEQPGQ YRAPPYRRSP AADAGSNGGA YESSAFVVRA PYARITSALE GGNEHIARHE
501: EVRRMGTDAR LLQEQVYGPA APGPGRAPLT PDRRAISVRT RR

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.