Factsheet for PGSC0003DMT400033769

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009550.2.1	Tomato	mitochondrion	93.68	93.68
PGSC0003DMT400032944	Potato	mitochondrion	27.17	55.77
KRH45249	Soybean	mitochondrion	47.31	51.01
KRH75395	Soybean	mitochondrion	47.78	50.62
VIT_01s0011g03330.t01	Wine grape	mitochondrion	51.52	47.01
TraesCS4D01G219500.2	Wheat	mitochondrion	19.2	44.57
CDY50176	Canola	mitochondrion	40.75	44.16
CDY21093	Canola	mitochondrion	40.75	44.05
CDY19375	Canola	mitochondrion	41.92	43.87
TraesCS4B01G219300.1	Wheat	mitochondrion	18.74	43.48
HORVU4Hr1G062250.1	Barley	mitochondrion	18.74	43.48
TraesCS4A01G084900.2	Wheat	mitochondrion	17.8	41.99
EER92528	Sorghum	mitochondrion	18.27	41.94
AT1G13340.1	Thale cress	mitochondrion	40.05	41.81
EER93588	Sorghum	mitochondrion	33.02	41.23
Zm00001d033714_P001	Maize	mitochondrion	33.72	41.03
Os03t0710000-01	Rice	plasma membrane	33.49	40.28
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	40.05	40.14
Os03t0257500-01	Rice	mitochondrion	18.03	39.9
Zm00001d034058_P004	Maize	mitochondrion	17.56	39.47
Zm00001d028457_P001	Maize	mitochondrion	18.27	39.0
TraesCS4D01G044800.1	Wheat	mitochondrion	30.91	38.15
TraesCS4B01G044800.1	Wheat	mitochondrion	29.98	38.1
Bra019826.1-P	Field mustard	mitochondrion	43.09	37.25
GSMUA_Achr6P24100_001	Banana	mitochondrion	42.62	37.22
TraesCS4B01G045100.1	Wheat	mitochondrion	30.68	37.11
TraesCS4A01G269300.1	Wheat	mitochondrion	30.68	37.01
TraesCS4D01G044400.1	Wheat	mitochondrion	29.98	36.36
TraesCS4B01G219400.1	Wheat	mitochondrion	20.37	32.95
OQU90964	Sorghum	mitochondrion	12.88	32.93
GSMUA_Achr10P...	Banana	mitochondrion	37.24	32.85
Zm00001d034057_P001	Maize	mitochondrion	17.33	32.31
Zm00001d047887_P001	Maize	mitochondrion	18.5	31.73
Zm00001d047886_P001	Maize	mitochondrion	18.5	31.6
Zm00001d047885_P001	Maize	mitochondrion	18.27	31.2
TraesCS4D01G219800.1	Wheat	mitochondrion	20.37	30.96
HORVU4Hr1G062260.2	Barley	plastid	20.37	30.53
TraesCS4A01G084800.1	Wheat	mitochondrion	20.14	30.5
Zm00001d047884_P001	Maize	cytosol	8.67	25.87
EER92527	Sorghum	mitochondrion, plastid	31.15	24.81
Os03t0257600-01	Rice	mitochondrion	31.15	24.63
Zm00001d028456_P001	Maize	mitochondrion	30.45	24.48
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	30.91	24.44
HORVU4Hr1G062110.1	Barley	mitochondrion	31.15	24.27
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	29.98	23.93
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	29.98	23.62
Bra016733.1-P	Field mustard	mitochondrion	40.75	23.29
PGSC0003DMT400003908	Potato	plastid	23.89	20.86
PGSC0003DMT400070850	Potato	cytosol	23.42	18.94
PGSC0003DMT400032356	Potato	cytosol, mitochondrion	10.54	17.11
PGSC0003DMT400042551	Potato	nucleus	12.18	16.83
PGSC0003DMT400014529	Potato	nucleus	14.75	14.0
PGSC0003DMT400020212	Potato	cytosol	11.48	12.41
PGSC0003DMT400092826	Potato	nucleus	11.24	11.29
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	25.76	10.14
PGSC0003DMT400047266	Potato	nucleus	11.94	9.38
PGSC0003DMT400022180	Potato	nucleus	10.54	8.15

Protein Annotations

EnsemblPlants:PGSC0003DMT400033769	EnsemblPlantsGene:PGSC0003DMG400012974	EntrezGene:102592415	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF16
PFAM:PF03398	PGSC:PGSC0003DMG400012974	RefSeq:XP_006362561.1	SEG:seg	UniParc:UPI0002957843	UniProt:M1AZM5
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012974]

Coordinates

chr5:-:2260599..2262820

Molecular Weight (calculated)

48494.4 Da

IEP (calculated)

5.628

GRAVY (calculated)

-0.654

Length

427 amino acids

Sequence
(BLAST)

001: MGRKLDALLG RNFKISKFKA TANLAISRVT VLKNQRQARC SIARSDVVQL LNLGFHERAL LRVEQVIKEQ NMLDVFDMIE GYCLLTIERT NLIQQEKICP
101: EELKEAISSL IFAASRCGEF PELQELRAIF TSRFGKEFAA RAVELRNNCG VNTKMIQKLS KRMPSLEQRT KVLKEIAAEN NIVLKIEEII LENTEEEEVI
201: AKRKDQPEDH IPVLPQNVDH EARRKYKDVA AAAQAAFESA AYAAVAARAA VELSRSESRD LDDPKSPSQK PRNVSDSRED LKSEFHAGEE KNNEGVEKIE
301: TSQNYGFHSE VDQFSDGDEV EELKQRKFEE QFKRSVSVSS SDISADDILV DEVKSPRHGV VYDEIDEEVG EENRIPSLKR PKNEVFGSPV HQAGNEKEIE
401: GFTKQGAEKL DINKKPISMR TRKNLHW

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.