Factsheet for PGSC0003DMT400030456

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g032230.2.1	Tomato	nucleus	88.94	89.93
Zm00001d028142_P001	Maize	cytosol	5.81	63.0
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	5.71	62.0
CDY04642	Canola	cytosol	8.29	60.0
KRH60150	Soybean	cytosol, mitochondrion, nucleus, plastid	19.82	37.01
PGSC0003DMT400070850	Potato	cytosol	16.04	32.95
PGSC0003DMT400003908	Potato	plastid	13.92	30.88
PGSC0003DMT400032944	Potato	mitochondrion	5.9	30.77
KRH41442	Soybean	cytosol	12.07	29.37
KRH49036	Soybean	mitochondrion	26.54	27.35
KRH74171	Soybean	mitochondrion	26.54	27.07
Os01t0706400-01	Rice	plasma membrane	26.18	25.79
PGSC0003DMT400033769	Potato	mitochondrion	10.14	25.76
TraesCS3B01G284600.1	Wheat	nucleus	25.25	24.66
AT2G19710.1	Thale cress	mitochondrion, nucleus	21.2	24.55
TraesCS3D01G253500.1	Wheat	nucleus	25.16	24.44
Bra039012.1-P	Field mustard	mitochondrion	20.37	24.1
CDY35879	Canola	mitochondrion	20.37	24.1
Bra011109.1-P	Field mustard	mitochondrion	20.28	23.91
CDX82713	Canola	mitochondrion	20.18	23.83
CDY43502	Canola	mitochondrion	20.37	23.64
TraesCS3A01G252800.1	Wheat	cytosol	24.24	23.52
TraesCS3B01G288900.2	Wheat	plastid	24.7	23.26
HORVU3Hr1G066420.1	Barley	nucleus	25.25	23.16
EES03498	Sorghum	nucleus, plastid	25.25	22.15
Zm00001d011684_P002	Maize	nucleus, plastid	24.7	22.13
AT4G29440.1	Thale cress	mitochondrion	21.94	21.83
GSMUA_Achr1P14380_001	Banana	nucleus	23.87	20.8
PGSC0003DMT400042551	Potato	nucleus	5.9	20.71
VIT_11s0016g02580.t01	Wine grape	mitochondrion	20.09	18.49
PGSC0003DMT400014529	Potato	nucleus	7.56	18.22
PGSC0003DMT400032356	Potato	cytosol, mitochondrion	4.33	17.87
PGSC0003DMT400020212	Potato	cytosol	5.9	16.2
PGSC0003DMT400047266	Potato	nucleus	7.1	14.15
PGSC0003DMT400092826	Potato	nucleus	5.44	13.88
PGSC0003DMT400022180	Potato	nucleus	5.16	10.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400030456	EnsemblPlantsGene:PGSC0003DMG400011665	EntrezGene:102599934	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF13	PFAM:PF03398
PGSC:PGSC0003DMG400011665	RefSeq:XP_006352060.1	SEG:seg	UniParc:UPI0002949B63	UniProt:M1AUA3	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011665]

Coordinates

chr7:+:19608568..19614288

Molecular Weight (calculated)

118967.0 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.946

Length

1085 amino acids

Sequence
(BLAST)

0001: MKKSNFLRSS KDMLTKSFNS TKCKMSLKLA SSRLKLLKNK KEVQVKQMKR ELAQLLDSGQ DRTARIRVEH VVREEKMMAA YDLIEIYCEL IVARLPIIES
0101: QKNCPIDLKE AITSVVFASP RCGDIPELVD VRKHLTAKYG KEFISAAVEL RPNCGVSRML VEKLSTKAPD GQTKMRILGA IAEEHGVKWD PKSVEETESV
0201: PSNDLLNGSG SLEKAGNIHE DPLHLNASDA RLPFDHGKWP NASSNSPEQN ARSSLGTQSF DSAYSGGRGI TPSSSYHHGV SPSGSRDEKL EAGQSVPGDG
0301: KFSIDRQNWN MEFKDATSAA QAAAESAERA SLAARAAAEL SRVSRQYSSE SQRPEVQSSG GGGRGMYDTS KYEHCPKDSA NSSLSDRNPR LQNERIDSLH
0401: HENLARATRQ FHDDNHGTSG GSGPGKYGNS RMHEHFPKDS VVSSLPDRTS SFQQERTESL QHDNIPRATR HHNGMHGTLD RPDSQVSAGA TGSINNDNSF
0501: ASVGEGDKYM QKSLSEEDSE MITRKSYGRT ESESTSSFKN ESMEDFNYFG EEATTKDPKI NSSDSYLSTS GFDENIHHSS QQSYGYDKTN DPFNNVYQGH
0601: IPSETVNKSS HDSASVAFDD SGSEEDYNIK FYSDPTYDDQ QAKLYFPSPE RKSPTYNSAI KTTWSFDSDK SLEKSSLASE ISVEKQSPQL YKSLAAPGDN
0701: LRQENVVPSF DDSDGMNSES DNEIVQHPNG TDGKKRLPAL PRPQTDDDSL ASSVSESEKE FTFGKLTGGL KHKGHIPPPY LRSQLNNVPS SVESAKGSPA
0801: VRSQDVAPPK SSVGLGMRMK IDDKSNSRLD DTHYASDTDS SDAEFSQEAS SYSQRTYAQK TGSEVNTKYA GLRGSPTYFD SDSSDSEADP KKPSFAGRSQ
0901: LSSGFSRRTK ASSSSLDTNV SSKFKISSET AVNSDSGVDR KPINRSFGVK TQEPLKPIRN SYAADTQEPQ RPTKNFYSSE SHESPSDERI SLEQPSAGPA
1001: VPRPIAQTKI TSHEGRQKMG RVEKPSSSYQ MAAASGNNNA PKAPASSGDK FSSEDSMKKA SHVHPKLPDY DDIASKLLSL RTNPK

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.