CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	25.33	38.0
Zm00001d028142_P001	Maize	cytosol	25.33	38.0
CDY53122	Canola	mitochondrion	38.67	17.96
CDY58595	Canola	mitochondrion	38.67	17.96
CDY69937	Canola	plastid	46.67	16.87
CDX87282	Canola	cytosol	22.67	16.83
CDY41639	Canola	plastid	47.33	16.51
CDX75521	Canola	plastid	46.67	16.17
CDX69159	Canola	plastid	47.33	16.14
CDY20110	Canola	nucleus	24.67	15.48
CDY21843	Canola	nucleus	24.67	15.1
KRH60150	Soybean	cytosol, mitochondrion, nucleus, plastid	56.67	14.63
CDY49897	Canola	nucleus	26.0	14.55
CDY43502	Canola	mitochondrion	90.0	14.44
CDX87899	Canola	nucleus	26.0	14.13
CDY48635	Canola	cytosol	31.33	14.03
CDY46461	Canola	cytosol, mitochondrion, nucleus	50.67	13.43
CDX98558	Canola	plastid	22.67	13.18
CDX91784	Canola	nucleus	50.67	13.1
CDX78503	Canola	mitochondrion	30.67	13.07
CDX93076	Canola	mitochondrion	20.67	12.81
CDX97673	Canola	plastid	22.0	12.79
CDY49898	Canola	mitochondrion	23.33	12.77
CDY15051	Canola	cytosol	14.67	12.43
CDY35879	Canola	mitochondrion	74.0	12.1
CDX82713	Canola	mitochondrion	74.0	12.08
KRH41442	Soybean	cytosol	35.33	11.88
CDX70491	Canola	mitochondrion	30.0	11.87
CDX87900	Canola	mitochondrion	22.67	11.81
CDY52976	Canola	mitochondrion	24.0	11.65
AT4G29440.1	Thale cress	mitochondrion	82.67	11.38
CDY22873	Canola	mitochondrion	25.33	10.61
CDY33850	Canola	mitochondrion	24.67	10.19
CDY50176	Canola	mitochondrion	26.0	9.9
CDY21093	Canola	mitochondrion	26.0	9.87
CDY37561	Canola	nucleus	24.0	9.55
CDY41108	Canola	nucleus	24.0	9.52
CDY19375	Canola	mitochondrion	25.33	9.31
KRH49036	Soybean	mitochondrion	64.0	9.12
KRH74171	Soybean	mitochondrion	64.0	9.02
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	60.0	8.29
Solyc07g032230.2.1	Tomato	nucleus	58.67	8.2
Os01t0706400-01	Rice	plasma membrane	56.0	7.63
TraesCS3B01G284600.1	Wheat	nucleus	54.67	7.38
TraesCS3D01G253500.1	Wheat	nucleus	54.67	7.34
VIT_11s0016g02580.t01	Wine grape	mitochondrion	55.33	7.04
TraesCS3B01G288900.2	Wheat	plastid	54.0	7.03
HORVU3Hr1G066420.1	Barley	nucleus	55.33	7.02
Zm00001d011684_P002	Maize	nucleus, plastid	56.0	6.94
TraesCS3A01G252800.1	Wheat	cytosol	50.67	6.8
EES03498	Sorghum	nucleus, plastid	56.0	6.79
GSMUA_Achr1P14380_001	Banana	nucleus	55.33	6.67
CDX68838	Canola	nucleus	22.0	5.24
CDX75238	Canola	nucleus	21.33	5.07

Protein Annotations

EnsemblPlants:CDY04642	EnsemblPlantsGene:GSBRNA2T00119231001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF13	PFAM:PF03398	ProteinID:CDY04642	ProteinID:CDY04642.1
UniParc:UPI0004EEC2D6	MapMan:35.2	:	:	:	:

Description

BnaC05g16800D

Coordinates

chrLK031956:+:560022..560762

Molecular Weight (calculated)

16737.4 Da

IEP (calculated)

8.939

GRAVY (calculated)

0.033

Length

150 amino acids

Sequence
(BLAST)

001: MFLSPLKKDT QIKQLRRELA QLLESGHTQT ALIRVEHVVR EEKTVAAYEL VGIYCELIIV RLGVIDSHKT WPNDLKEAVA SVLYASKMLS DVAELADVVK
101: YFSAKYDKYF VSAAVGLQSD FGVSRLLVDK LSVKAPDGPT KNKILKEIAT

Best Arabidopsis Sequence Match ( AT4G29440.2 )
(BLAST)

0001: MNKKDTQIKQ LRRELAHLLE SGQTQTAKIR VEHVVREEKT VAAYELVGIY CELLVARLGV IDSQKTCPND LKEAVASVLY ASQRLTDVGE LSDIVKHFSA
0101: KYGKDFVSAA IGLQPDSGVS RLLVEKLSVK APDGPTKIKI LTEIATQHNV TWEAESLVES DPKETMSASG ASSSVSQPAT GIKSESSRIQ NNQPPVFQAA
0201: ATVNVSQNSY ATDGRSSSRM TSTDFNVGKT PDHYHQDPKP SGDRVDGREH RDHNPGHGDT SPFETKFVDA TSAARAAAES AERASFAARR AAELSSKERM
0301: MMMQNSTESR NSSSYENLRS NPPHSRTSSS NMQGGGFGKE ELLKSNNRQV DQSTTTTRAE SSKKTVDELS ENTSWRRGHS RENSLEMRPN DSFAKIGREK
0401: QQPGMDDINL SSSADVLNKK QSSRASSHSP SSNFSDDNDV TALDHIDSPS IFEENKFQST VGDRESYNDS PVVVVAPAFD DYSSFFDKPQ FDTEDAYHDE
0501: PEQGLGFSLL GSSSKTSDHM PTEISSWSLE GHKDLGKLSS ASTSQVLEKE KPSSPPTFDD GPTSPPASLH EPEPSAKFDD YDRDSESEED NLGRLSGRAE
0601: GKSKLTAQKS HMSEGPDDLG RYFFPSDTED QGDDSKTQEE SDAETPTGLK FGPLASGLEN ETTLPSYGSS PPRDKTSSKS IKEYLPTEVD PSRSSSLQTA
0701: SSSSIRNELY TQKASNSDKR PSSIPPDSSS SDDESDMELP KRVSFRYQEK RTESRTRPTH LHSGVSHKDL EEEIPTRAST RSQDRRTHKT TPASASASYF
0801: HTMSSDDEDE KEVHRDTAHI QTRPYISISR RTKGQERRPS LVTAKIDKVS FDEESPPKLS PEAKPLTKQQ GSASSLSYLP KTEKVSHDQE SHPKLGLGAK
0901: PLIKQQGSAS SLSFLPKTNK ASPDQDSPPK LVPKEKPAAK QRGSASSLSF LPKTDKASPD QDSPPKLLPK EKPAAKQQGS ATSSSSLPKT EKISHYRESP
1001: SKLTPEAKSM AKQEGLASSS SSLPKTVTSP DPETPAKEKA SHVHPKLPDY DDIFAKLGAL RR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.