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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 3
  • mitochondrion 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027239.1-P Field mustard plastid 94.96 96.84
CDX98558 Canola plastid 95.35 95.35
CDY20110 Canola nucleus 60.85 65.69
AT3G15490.1 Thale cress mitochondrion, nucleus 53.1 64.93
CDY21843 Canola nucleus 59.3 62.45
CDX93076 Canola mitochondrion 48.84 52.07
CDY15051 Canola cytosol 34.11 49.72
KRH26063 Soybean cytosol 22.48 27.75
KRH55350 Soybean extracellular 20.16 25.49
CDY04642 Canola cytosol 12.79 22.0
CDX87282 Canola cytosol 17.05 21.78
CDY22873 Canola mitochondrion 26.74 19.27
CDX87899 Canola nucleus 20.54 19.2
CDY33850 Canola mitochondrion 26.36 18.73
CDY49897 Canola nucleus 18.99 18.28
CDX78503 Canola mitochondrion 24.03 17.61
CDY49898 Canola mitochondrion 17.44 16.42
CDX70491 Canola mitochondrion 24.03 16.36
CDX87900 Canola mitochondrion 17.05 15.28
CDY52976 Canola mitochondrion 17.83 14.89
CDY41108 Canola nucleus 20.16 13.76
CDY37561 Canola nucleus 19.77 13.53
CDY53122 Canola mitochondrion 16.67 13.31
CDY58595 Canola mitochondrion 16.67 13.31
CDY50176 Canola mitochondrion 18.99 12.44
CDY21093 Canola mitochondrion 18.99 12.41
CDY69937 Canola plastid 19.77 12.29
CDX75521 Canola plastid 20.16 12.01
CDX69159 Canola plastid 20.16 11.82
CDY19375 Canola mitochondrion 18.6 11.76
CDY41639 Canola plastid 19.38 11.63
CDY48635 Canola cytosol 12.02 9.25
CDY46461 Canola cytosol, mitochondrion, nucleus 19.38 8.83
CDX91784 Canola nucleus 19.38 8.62
CDX75238 Canola nucleus 18.99 7.77
CDX68838 Canola nucleus 18.22 7.46
CDY35879 Canola mitochondrion 18.99 5.34
CDX82713 Canola mitochondrion 18.99 5.33
CDY43502 Canola mitochondrion 17.83 4.92
Protein Annotations
EnsemblPlants:CDX97673EnsemblPlantsGene:GSBRNA2T00104908001Gene3D:1.20.1260.60GO:GO:0006810GO:GO:0008150GO:GO:0015031
InterPro:Ist1PANTHER:PTHR12161PANTHER:PTHR12161:SF16PFAM:PF03398ProteinID:CDX97673ProteinID:CDX97673.1
UniParc:UPI0004EDBC3FMapMan:35.2::::
Description
BnaA05g24060D
Coordinates
chrLK031900:+:875582..876683
Molecular Weight (calculated)
29762.7 Da
IEP (calculated)
9.419
GRAVY (calculated)
-0.523
Length
258 amino acids
Sequence
(BLAST)
001: MMFAKKTEQK FGCYCNVFAV WSRSSRWQKA SKCKLHIQNL LCSVKVQRTR TECMFRQSRS DIAQLAPYGR FREALPKAKQ FYEDERRLLA YDQVKYFCTS
101: ILQSFSPLLN QNDVHLLPDE TKESMAGLIF AASRIGELKE LQIIRSLFVQ RFGQKFDKDS VDLRPGNLVS SEIVKILDTT MPQDAITPEI IMAISQKYQT
201: DFITSVDSIT EDSASLNNLG NADSDTLARR KKVTKENPKC LHTDRGESQE RDRSKFMR
Best Arabidopsis Sequence Match ( AT3G15490.1 )
(BLAST)
001: MVRQSRSDIA QLLSYGRYSE ALPKAKQFYE DERRLSAYDQ VELFCTTILQ NISSLKYENN VDLLPEETKK AMAGIIFAAS RIGELEDLQH IRSFFVQRFG
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q4PSP2]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.