Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04642 | Canola | cytosol | 14.03 | 31.33 |
| CDX91784 | Canola | nucleus | 49.55 | 28.62 |
| CDY46461 | Canola | cytosol, mitochondrion, nucleus | 47.76 | 28.27 |
| KRH08570 | Soybean | nucleus | 42.99 | 27.27 |
| KXG24567 | Sorghum | cytosol, plastid | 41.79 | 27.13 |
| VIT_18s0164g00040.t01 | Wine grape | nucleus | 43.58 | 27.09 |
| TraesCS3D01G451700.1 | Wheat | cytosol | 41.19 | 26.95 |
| CDY53122 | Canola | mitochondrion | 25.97 | 26.93 |
| CDY58595 | Canola | mitochondrion | 25.97 | 26.93 |
| KRH70215 | Soybean | nucleus | 42.99 | 26.82 |
| TraesCS3B01G498800.1 | Wheat | cytosol | 40.9 | 26.81 |
| HORVU3Hr1G098720.3 | Barley | cytosol | 40.9 | 26.71 |
| TraesCS3A01G459100.1 | Wheat | cytosol, plastid | 40.9 | 26.65 |
| Solyc04g072560.2.1 | Tomato | nucleus, unclear | 41.79 | 26.52 |
| PGSC0003DMT400070850 | Potato | cytosol | 41.79 | 26.52 |
| AT1G34220.1 | Thale cress | nucleus | 51.34 | 26.5 |
| GSMUA_Achr5P23420_001 | Banana | mitochondrion | 38.21 | 26.12 |
| KRH35011 | Soybean | mitochondrion | 29.55 | 25.45 |
| Zm00001d049479_P003 | Maize | cytosol, mitochondrion, plastid | 40.9 | 25.09 |
| Os08t0175200-01 | Rice | nucleus | 41.49 | 24.78 |
| Zm00001d024425_P003 | Maize | cytosol | 41.49 | 24.52 |
| GSMUA_Achr6P02830_001 | Banana | cytosol | 42.09 | 23.98 |
| CDX75521 | Canola | plastid | 28.06 | 21.71 |
| CDX69159 | Canola | plastid | 28.06 | 21.36 |
| CDY41639 | Canola | plastid | 26.87 | 20.93 |
| CDY69937 | Canola | plastid | 25.07 | 20.24 |
| CDX87282 | Canola | cytosol | 10.75 | 17.82 |
| CDY20110 | Canola | nucleus | 10.75 | 15.06 |
| CDX87899 | Canola | nucleus | 11.94 | 14.49 |
| CDY21843 | Canola | nucleus | 10.45 | 14.29 |
| CDY49897 | Canola | nucleus | 11.04 | 13.81 |
| CDX78503 | Canola | mitochondrion | 13.73 | 13.07 |
| CDY19375 | Canola | mitochondrion | 15.82 | 12.99 |
| CDY50176 | Canola | mitochondrion | 15.22 | 12.94 |
| CDY21093 | Canola | mitochondrion | 15.22 | 12.91 |
| CDX70491 | Canola | mitochondrion | 14.33 | 12.66 |
| CDX93076 | Canola | mitochondrion | 8.96 | 12.4 |
| CDX97673 | Canola | plastid | 9.25 | 12.02 |
| CDY22873 | Canola | mitochondrion | 12.84 | 12.01 |
| CDY33850 | Canola | mitochondrion | 12.84 | 11.85 |
| CDY49898 | Canola | mitochondrion | 9.55 | 11.68 |
| CDY52976 | Canola | mitochondrion | 10.75 | 11.65 |
| CDY41108 | Canola | nucleus | 13.13 | 11.64 |
| CDX98558 | Canola | plastid | 8.96 | 11.63 |
| CDY37561 | Canola | nucleus | 12.84 | 11.41 |
| CDX87900 | Canola | mitochondrion | 9.55 | 11.11 |
| CDY15051 | Canola | cytosol | 5.67 | 10.73 |
| CDY43502 | Canola | mitochondrion | 25.07 | 8.98 |
| CDY35879 | Canola | mitochondrion | 24.18 | 8.83 |
| CDX82713 | Canola | mitochondrion | 23.88 | 8.71 |
| CDX75238 | Canola | nucleus | 11.04 | 5.86 |
| CDX68838 | Canola | nucleus | 10.75 | 5.71 |
Protein Annotations
| EnsemblPlants:CDY48635 | EnsemblPlantsGene:GSBRNA2T00091408001 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | ncoils:Coil | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF5 | PFAM:PF03398 | ProteinID:CDY48635 |
| ProteinID:CDY48635.1 | SEG:seg | UniParc:UPI0004EE9EAB | UniProt:A0A078ICM0 | MapMan:35.2 | : |
Description
BnaC06g08120DBnaC06g08120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICM0]
Coordinates
chrLK032783:-:101909..104728
Molecular Weight (calculated)
37587.4 Da
IEP (calculated)
7.040
GRAVY (calculated)
-0.373
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMLDSFFNK TFKAVKCKTL LKLLIPRIKL IRNRREAKIK QMRREIAKLL ETGQEATTRI RVEHIIREEK MMAAQEILEL FCELIAVHMS FASKYGKEFV
101: AAAFELKPDS GVNRKLVELP NINLIGTLLL QKLISSNRVK ILLMDQSNLV GGSKLPLREE QDKGPRLTML PLSRPEEPSD SESEYESLEF PEILNVLLRP
201: TPGATPENAP EAVKPATYEH TSPDMPFDSE NAGDEKLSFI RDEHPAISST TVVEVQQSSP FVFSQYVTES EKRDSCSPPS ACVVGPLFTE KSGASRDLPR
301: KISDMDLQDV LTAAQAAADS ADRIRIRIRP RPNGH
101: AAAFELKPDS GVNRKLVELP NINLIGTLLL QKLISSNRVK ILLMDQSNLV GGSKLPLREE QDKGPRLTML PLSRPEEPSD SESEYESLEF PEILNVLLRP
201: TPGATPENAP EAVKPATYEH TSPDMPFDSE NAGDEKLSFI RDEHPAISST TVVEVQQSSP FVFSQYVTES EKRDSCSPPS ACVVGPLFTE KSGASRDLPR
301: KISDMDLQDV LTAAQAAADS ADRIRIRIRP RPNGH
001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.