CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75521	Canola	plastid	96.36	97.92
Bra011633.1-P	Field mustard	mitochondrion, plastid	96.36	97.47
CDY69937	Canola	plastid	80.45	85.3
CDY41639	Canola	plastid	82.5	84.42
AT4G35730.1	Thale cress	plastid	86.14	81.33
VIT_00s1235g00010.t01	Wine grape	mitochondrion	49.55	62.64
KRH07948	Soybean	mitochondrion	57.95	57.82
KRH69704	Soybean	mitochondrion	57.5	57.76
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	42.05	51.25
PGSC0003DMT400003908	Potato	plastid	54.09	48.67
CDY04642	Canola	cytosol	16.14	47.33
Solyc02g083130.2.1	Tomato	plastid	53.86	43.65
Os09t0547200-01	Rice	mitochondrion	44.77	41.39
EER99304	Sorghum	plastid	44.32	40.62
CDY58595	Canola	mitochondrion	29.55	40.25
CDY53122	Canola	mitochondrion	29.55	40.25
GSMUA_Achr3P26880_001	Banana	mitochondrion	39.32	40.05
TraesCS5D01G353300.1	Wheat	mitochondrion	42.5	38.8
TraesCS5B01G347800.1	Wheat	mitochondrion	42.5	38.64
TraesCS5A01G346800.1	Wheat	plastid	42.27	38.35
Zm00001d021453_P002	Maize	plastid	43.86	36.9
HORVU5Hr1G086370.1	Barley	nucleus, plastid	43.18	34.8
CDX87282	Canola	cytosol	12.95	28.22
CDY48635	Canola	cytosol	21.36	28.06
CDY46461	Canola	cytosol, mitochondrion, nucleus	35.45	27.56
CDX91784	Canola	nucleus	35.91	27.24
CDX87899	Canola	nucleus	15.91	25.36
CDY19375	Canola	mitochondrion	22.05	23.77
CDY49898	Canola	mitochondrion	14.77	23.72
CDY21093	Canola	mitochondrion	21.14	23.54
CDY49897	Canola	nucleus	14.32	23.51
CDY52976	Canola	mitochondrion	16.36	23.3
CDY50176	Canola	mitochondrion	20.45	22.84
CDX78503	Canola	mitochondrion	17.95	22.44
CDX87900	Canola	mitochondrion	14.55	22.22
CDY20110	Canola	nucleus	11.82	21.76
CDY21843	Canola	nucleus	12.05	21.63
CDY22873	Canola	mitochondrion	17.27	21.23
CDY33850	Canola	mitochondrion	17.5	21.21
CDY41108	Canola	nucleus	18.18	21.16
CDY37561	Canola	nucleus	17.95	20.95
CDX70491	Canola	mitochondrion	17.95	20.84
CDX98558	Canola	plastid	11.82	20.16
CDX97673	Canola	plastid	11.82	20.16
CDY15051	Canola	cytosol	7.95	19.77
CDX93076	Canola	mitochondrion	10.23	18.59
CDY35879	Canola	mitochondrion	32.73	15.7
CDX82713	Canola	mitochondrion	32.5	15.56
CDY43502	Canola	mitochondrion	32.27	15.19
CDX75238	Canola	nucleus	18.64	13.0
CDX68838	Canola	nucleus	18.41	12.86

Protein Annotations

EnsemblPlants:CDX69159	EnsemblPlantsGene:GSBRNA2T00130947001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	PFAM:PF03398	ProteinID:CDX69159	ProteinID:CDX69159.1
SEG:seg	UniParc:UPI0004EB0525	MapMan:35.2	:	:	:

Description

BnaC01g02940D

Coordinates

chrLK031789:+:3216501..3218641

Molecular Weight (calculated)

48946.9 Da

IEP (calculated)

8.736

GRAVY (calculated)

-0.577

Length

440 amino acids

Sequence
(BLAST)

001: MTAAGVASVQ TKKLLKFSLS LFRRGFNSSK CKTAAKMAVA RIKLLRNKRQ VVVKQMRRDI ALLLQSGQDA TARIRVEHVI REQNILAANE IIELFCELIV
101: SRLTIITKQK ECPVDLKEGI ASLIFAAPRC SEIPELGDLK DIFEKKYGRD FVSAATELRP TCGVNRMLID KLSVRHPGGE FKLKIMKEIA KEFQVDWDTA
201: ETEQELLKPQ EATIDGPRAF VSASSLPVNR ASDEPIDPTK AVPRSSSSMS SINTHYHDTE SAAEAAAELA KQAVAAAQVA ALLANRRDSS NSNKEFSVSS
301: FSSLDHSRRR SETSSYYYAK PSVANRRYSC NNPGVNEEDY AKTEAEAKGT MRRRHTLPPP ATTEVKFDES DYYEEDTEPE EGPLQRRASS LPPDRAPPQA
401: PQSAESRRDS SGHHVHPKLP DYDELAARFD SIRQSKGPLI

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.