CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021453_P002	Maize	plastid	91.04	83.56
Os09t0547200-01	Rice	mitochondrion	77.92	78.57
TraesCS5D01G353300.1	Wheat	mitochondrion	71.88	71.58
TraesCS5A01G346800.1	Wheat	plastid	71.46	70.72
TraesCS5B01G347800.1	Wheat	mitochondrion	70.83	70.25
HORVU5Hr1G086370.1	Barley	nucleus, plastid	71.67	63.0
VIT_00s1235g00010.t01	Wine grape	mitochondrion	40.0	55.17
KRH69704	Soybean	mitochondrion	43.75	47.95
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	36.04	47.92
KRH07948	Soybean	mitochondrion	43.75	47.62
CDY69937	Canola	plastid	39.79	46.02
CDX75521	Canola	plastid	41.04	45.5
Bra010522.1-P	Field mustard	plastid	39.79	45.37
Bra011633.1-P	Field mustard	mitochondrion, plastid	41.04	45.29
CDX69159	Canola	plastid	40.62	44.32
GSMUA_Achr3P26880_001	Banana	mitochondrion	39.79	44.21
CDY41639	Canola	plastid	39.58	44.19
PGSC0003DMT400003908	Potato	plastid	43.33	42.54
AT4G35730.1	Thale cress	plastid	40.83	42.06
KXG19452	Sorghum	mitochondrion	23.12	40.36
KXG33152	Sorghum	mitochondrion	26.25	39.25
Solyc02g083130.2.1	Tomato	plastid	42.5	37.57
EER92528	Sorghum	mitochondrion	12.92	33.33
KXG24567	Sorghum	cytosol, plastid	32.5	30.23
OQU90964	Sorghum	mitochondrion	9.58	27.54
EER93588	Sorghum	mitochondrion	19.17	26.9
EER92527	Sorghum	mitochondrion, plastid	18.33	16.42
EES03498	Sorghum	nucleus, plastid	33.33	12.93
EES04550	Sorghum	nucleus	18.33	12.88
KXG20673	Sorghum	cytosol, nucleus, plastid	17.5	10.7

Protein Annotations

Gene3D:1.20.1260.60	MapMan:35.2	EntrezGene:8064444	UniProt:C5X721	ncoils:Coil	EnsemblPlants:EER99304
ProteinID:EER99304	ProteinID:EER99304.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	PFAM:PF03398
PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	EnsemblPlantsGene:SORBI_3002G286100	UniParc:UPI0001A83E13	RefSeq:XP_002462783.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:66567847..66570741

Molecular Weight (calculated)

53967.5 Da

IEP (calculated)

6.745

GRAVY (calculated)

-0.768

Length

480 amino acids

Sequence
(BLAST)

001: MAAMMMATGD SKSPARALRR LAGAAVAAVL LRRSFSASKC KTEARMATAR MKLLRNRREA QVRQMRRDIA ALLRDKQEDT ARIRVEHVIR EQNFMAANEI
101: IELFCELIVT RLPIIAKQKE CPADLKEGIC SLIFAAPRCS ELPELGRMRD IFEKKYGKDF VSAAVDLRPD AAVNNLLIEK LSVKKPSGQI KLKVLKDIAK
201: EHQIDWDTTE SEQELLKPPE ELIKGPSTFV EASNMPVKTI LTPHVLQPNP VNFSYRYSDD EYDDRGTMQF KDAASAARAA AESAERAASA AKAAADFANK
301: NNHPFDEDED CKASSNEFTH PRKRQSMSNS SRSSRKEDAD AFDEVKPHGG RASSTGSFSG KNHVEDDNDR YPVDLDSRKT RRRNGRAARK VHSEIKFDDS
401: EGLCSESEDE NDVEIQSVER PLPPTREPFS ENRHSEDEEP DQDFPELPKA NLHSRVHPNM PLDYETLTAR FEALKSGKLP

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.