Factsheet for HORVU5Hr1G086370.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G353300.1	Wheat	mitochondrion	83.15	94.19
TraesCS5B01G347800.1	Wheat	mitochondrion	82.05	92.56
TraesCS5A01G346800.1	Wheat	plastid	81.87	92.16
EER99304	Sorghum	plastid	63.0	71.67
Os09t0547200-01	Rice	mitochondrion	62.27	71.43
Zm00001d021453_P002	Maize	plastid	60.81	63.48
VIT_00s1235g00010.t01	Wine grape	mitochondrion	34.07	53.45
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	30.59	46.26
CDY69937	Canola	plastid	34.8	45.78
Bra010522.1-P	Field mustard	plastid	34.98	45.37
KRH69704	Soybean	mitochondrion	36.08	44.98
KRH07948	Soybean	mitochondrion	36.26	44.9
CDX75521	Canola	plastid	35.35	44.57
Bra011633.1-P	Field mustard	mitochondrion, plastid	35.35	44.37
CDY41639	Canola	plastid	34.62	43.95
CDX69159	Canola	plastid	34.8	43.18
GSMUA_Achr3P26880_001	Banana	mitochondrion	33.52	42.36
PGSC0003DMT400003908	Potato	plastid	36.81	41.1
AT4G35730.1	Thale cress	plastid	34.98	40.99
Solyc02g083130.2.1	Tomato	plastid	37.36	37.57
HORVU3Hr1G063860.1	Barley	plastid	23.63	35.54
HORVU4Hr1G062250.1	Barley	mitochondrion	11.9	35.33
HORVU3Hr1G098720.3	Barley	cytosol	27.66	29.43
HORVU4Hr1G062260.2	Barley	plastid	11.9	22.81
HORVU4Hr1G062110.1	Barley	mitochondrion	17.77	17.7
HORVU3Hr1G066420.1	Barley	nucleus	27.47	12.68
HORVU6Hr1G025460.3	Barley	nucleus	16.3	12.09
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	14.1	10.61

Protein Annotations

EnsemblPlants:HORVU5Hr1G086370.1	EnsemblPlantsGene:HORVU5Hr1G086370	Gene3D:1.20.1260.60	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1
PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	PFAM:PF03398	SEG:seg	UniParc:UPI000B46D2DA	UniProt:A0A287S4C1
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:576196052..576200696

Molecular Weight (calculated)

60149.5 Da

IEP (calculated)

9.603

GRAVY (calculated)

-0.849

Length

546 amino acids

Sequence
(BLAST)

001: APAPAPTDAR KPQQNCQTPH PAGPAAISTP TRNTQHTQAA RAPRRLPSPP LPSHLRRRRR ARERPAGGRK MMMPTGGDSK SPVRALRRLA GSLLAAARLR
101: GSFSASKCKT EARMAAARMK LLRNRREAQV RKMRGDVAAL LRDGREDTAR IRVEHVIREQ NTMAANEIIE LFCELIVTRL PIIAKQKECP ADLKEGICSL
201: IFAAPRCSEL PELTRMRDLF EKKYGKDFVA AAVDLRPNAG VNNLLIEKLS VNKPSGQTKL KVLKDIAKEH QIDWDTSEAE QVLLKPAEEL IQGPSSFGEA
301: SKMPVKTTLS ANFVQPSPSN YSSGYTDEYD NNNVGGAMQF KDAASAARAA AESAAQAASA AKAAANLANQ NNHSSDEDDD DDEDWKTTLH ESTHSSRRQS
401: MSNSSRTSRT FDETRLRGST GRRLSGSNHM EDKDPDLLQD LGTGRTRRRN SRAASKVHSE IKFDDSEAED GSEAEIQSSL ERRPPRREQY SGNGYHEEKA
501: AEDNYEDFPE PPKANPGSCV HPNMPLDFET LTARFEALRS SGGKLP

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.