Factsheet for VIT_00s1235g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	82.18	79.22
KRH69704	Soybean	mitochondrion	68.39	54.34
KRH07948	Soybean	mitochondrion	68.68	54.2
CDY69937	Canola	plastid	62.07	52.05
Bra010522.1-P	Field mustard	plastid	61.78	51.07
CDX75521	Canola	plastid	63.22	50.81
Bra011633.1-P	Field mustard	mitochondrion, plastid	63.22	50.57
CDY41639	Canola	plastid	61.78	50.0
CDX69159	Canola	plastid	62.64	49.55
PGSC0003DMT400003908	Potato	plastid	68.68	48.88
AT4G35730.1	Thale cress	plastid	64.94	48.5
Solyc02g083130.2.1	Tomato	plastid	66.95	42.91
GSMUA_Achr3P26880_001	Banana	mitochondrion	50.0	40.28
EER99304	Sorghum	plastid	55.17	40.0
VIT_01s0011g03610.t01	Wine grape	mitochondrion	37.64	39.82
Os09t0547200-01	Rice	mitochondrion	54.31	39.71
VIT_14s0006g03050.t01	Wine grape	mitochondrion	17.53	39.1
TraesCS5D01G353300.1	Wheat	mitochondrion	53.45	38.59
TraesCS5B01G347800.1	Wheat	mitochondrion	53.16	38.22
TraesCS5A01G346800.1	Wheat	plastid	52.87	37.94
Zm00001d021453_P002	Maize	plastid	53.74	35.76
HORVU5Hr1G086370.1	Barley	nucleus, plastid	53.45	34.07
VIT_12s0059g01700.t01	Wine grape	golgi	20.4	30.47
VIT_18s0164g00040.t01	Wine grape	nucleus	44.83	28.94
VIT_01s0011g03330.t01	Wine grape	mitochondrion	29.02	21.58
VIT_09s0002g04580.t01	Wine grape	nucleus	22.41	15.57
VIT_11s0016g02580.t01	Wine grape	mitochondrion	38.51	11.37
VIT_11s0016g04010.t01	Wine grape	nucleus	22.13	10.61

Protein Annotations

ArrayExpress:VIT_00s1235g00010	EMBL:FN596084	EnsemblPlants:VIT_00s1235g00010.t01	EnsemblPlantsGene:VIT_00s1235g00010	Gene3D:1.20.1260.60	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	PFAM:PF03398
ProteinID:CCB57446	ProteinID:CCB57446.1	SEG:seg	UniParc:UPI0002108878	UniProt:F6HRY7	MapMan:35.2

Description

No Description!

Coordinates

chrUn:-:38069549..38073141

Molecular Weight (calculated)

38753.3 Da

IEP (calculated)

8.765

GRAVY (calculated)

-0.575

Length

348 amino acids

Sequence
(BLAST)

001: MKLGLSIFRR GFSSSKCKTM AKMAMARIKL LRNKREAVVR QMRRDIALLL QSGQDATARI RVEHVIREQN ILAANEFLEL FCELIIARLT IISKQRDCPA
101: DLKEGISSLI FAAPRCSDIP ELLAIRDNFE KKYGKDFVSA ATDLRPSCGV NRMLIDKLSV RTPMGEVKLK VMKEIAKEYQ IEWDTTESEN ELLKPPEELI
201: NGPCTFVSAS SMPVKPKPSQ PSDLNKPTAR STGTEESPPM HFKDMESAAE AAAESANKAI AAAQAAAYLA NKGPNLVTQS PGFNNNLNRR PNNGDDRQAY
301: RRHSYNAPSA HSNIKFDESD SDEEIETQDT YAGIQPPPGR DPPPYRKS

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.