Factsheet for VIT_09s0002g04580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0019g02260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79910.1	VIT_13s0019g02260.t01	AT2G39760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89505	Soybean	mitochondrion	20.36	53.97
GSMUA_Achr5P23530_001	Banana	nucleus	17.37	48.6
PGSC0003DMT400042551	Potato	nucleus	28.14	45.63
Solyc06g066690.2.1	Tomato	nucleus	27.94	45.31
CDX87282	Canola	cytosol	17.17	42.57
PGSC0003DMT400014529	Potato	nucleus	36.73	40.89
Solyc03g120120.2.1	Tomato	nucleus	38.52	40.55
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	13.37	38.73
AT1G79910.1	Thale cress	nucleus	29.34	38.58
KRH23458	Soybean	mitochondrion	30.54	38.35
CDY37561	Canola	nucleus	27.94	37.14
Bra008502.1-P	Field mustard	nucleus	27.94	36.94
CDY41108	Canola	nucleus	27.74	36.77
KRH47048	Soybean	mitochondrion	27.15	35.6
Solyc12g043150.1.1	Tomato	nucleus	35.13	34.51
KRH44367	Soybean	mitochondrion	21.96	34.16
PGSC0003DMT400092826	Potato	nucleus	25.55	30.12
VIT_12s0059g01700.t01	Wine grape	golgi	13.77	29.61
GSMUA_Achr6P29590_001	Banana	cytosol	26.75	29.26
VIT_11s0016g04010.t01	Wine grape	nucleus	39.32	27.14
VIT_14s0006g03050.t01	Wine grape	mitochondrion	8.38	26.92
EES04550	Sorghum	nucleus	34.13	25.04
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	33.93	23.84
Zm00001d053852_P001	Maize	nucleus	32.53	23.8
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	33.73	23.64
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	33.53	23.5
Os02t0159200-01	Rice	nucleus	31.34	23.26
Os06t0687000-00	Rice	mitochondrion	33.73	23.18
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	32.34	22.85
HORVU6Hr1G025460.3	Barley	nucleus	33.53	22.83
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	32.73	22.56
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	30.14	22.44
VIT_00s1235g00010.t01	Wine grape	mitochondrion	15.57	22.41
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	32.34	22.31
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	32.14	22.18
KXG20673	Sorghum	cytosol, nucleus, plastid	34.53	22.04
GSMUA_Achr8P15690_001	Banana	mitochondrion	28.14	21.04
Zm00001d014521_P001	Maize	mitochondrion	32.34	21.01
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	14.57	20.22
VIT_01s0011g03610.t01	Wine grape	mitochondrion	12.38	18.84
VIT_18s0164g00040.t01	Wine grape	nucleus	16.37	15.21
VIT_01s0011g03330.t01	Wine grape	mitochondrion	13.97	14.96
Zm00001d036913_P001	Maize	cytosol	13.17	10.8
Zm00001d051744_P001	Maize	nucleus	9.18	9.16
VIT_11s0016g02580.t01	Wine grape	mitochondrion	16.57	7.04

Protein Annotations

Gene3D:1.20.1260.60	EntrezGene:100251435	wikigene:100251435	MapMan:35.2	ProteinID:CCB59478	ProteinID:CCB59478.1
UniProt:F6HYF5	EMBL:FN596494	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1
EntrezGene:LOC100251435	wikigene:LOC100251435	PFAM:PF03398	PANTHER:PTHR12161	PANTHER:PTHR12161:SF14	UniParc:UPI0002109CAF
ArrayExpress:VIT_09s0002g04580	EnsemblPlantsGene:VIT_09s0002g04580	EnsemblPlants:VIT_09s0002g04580.t01	unigene:Vvi.26088	RefSeq:XP_002279633	RefSeq:XP_002279633.1
RefSeq:XP_010654667.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:4146308..4149271

Molecular Weight (calculated)

56301.2 Da

IEP (calculated)

8.800

GRAVY (calculated)

-1.076

Length

501 amino acids

Sequence
(BLAST)

001: MFEGLLGRKF SSKCKSSIKP TMARIEMVRK RRKAMQNFLT NDIGDLLRRG LDTNAYSKAE GLCAELNQIS CYDFIDQFCG CILDHLSAMQ KERECPKECR
101: EAVSSLIFAA ARMADVPELR ELRNILTERY GNSLESFVNK EFAEKLKSKS SSKDMKLQLL RDIAQESSIE WDSKALEQKL FNPPASDQDQ KKKISPKKED
201: VARKEDEVDP SSNGKGDDID DGYRLNISRR SAVPGKDNQG FLSHETPSFA PREDNGGHQK FSSLERRVPE KEMDDRRPFP KRVALPPYTR PKPEKNPTGS
301: EALPGGSGGE EVDNKPERTP TGTNGPEQGE VAEKLNAQVS EGEAKPKPRS VRRRQLNPPP GDDQGNELVK TNPRRTRLED PRRGLQILNA GDHDQKDEKE
401: LDRLLIHYST KKPSQEPPPP PSHQTAAENS ESTGNRGPDH KHGPSRVRSL PIEPTTPTEE TRKGHVRATS FQPDMMKFSH VHPKLPDYDE VAARLAALRG
501: K

Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)

001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.