Factsheet for VIT_00s0302g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1235g00010.t01	Wine grape	mitochondrion	79.22	82.18
KRH69704	Soybean	mitochondrion	60.94	50.23
KRH07948	Soybean	mitochondrion	60.94	49.89
CDY69937	Canola	plastid	51.25	44.58
Bra010522.1-P	Field mustard	plastid	51.25	43.94
PGSC0003DMT400003908	Potato	plastid	59.0	43.56
CDX75521	Canola	plastid	52.08	43.42
Bra011633.1-P	Field mustard	mitochondrion, plastid	52.08	43.22
AT4G35730.1	Thale cress	plastid	55.68	43.13
CDY41639	Canola	plastid	51.25	43.02
CDX69159	Canola	plastid	51.25	42.05
Solyc02g083130.2.1	Tomato	plastid	56.79	37.75
GSMUA_Achr3P26880_001	Banana	mitochondrion	43.77	36.57
Os09t0547200-01	Rice	mitochondrion	47.65	36.13
EER99304	Sorghum	plastid	47.92	36.04
TraesCS5D01G353300.1	Wheat	mitochondrion	46.54	34.85
TraesCS5B01G347800.1	Wheat	mitochondrion	46.26	34.5
TraesCS5A01G346800.1	Wheat	plastid	45.98	34.23
Zm00001d021453_P002	Maize	plastid	46.54	32.12
VIT_01s0011g03610.t01	Wine grape	mitochondrion	28.53	31.31
HORVU5Hr1G086370.1	Barley	nucleus, plastid	46.26	30.59
VIT_14s0006g03050.t01	Wine grape	mitochondrion	11.91	27.56
VIT_18s0164g00040.t01	Wine grape	nucleus	34.9	23.38
VIT_12s0059g01700.t01	Wine grape	golgi	13.57	21.03
VIT_01s0011g03330.t01	Wine grape	mitochondrion	24.93	19.23
VIT_09s0002g04580.t01	Wine grape	nucleus	20.22	14.57
VIT_11s0016g04010.t01	Wine grape	nucleus	21.05	10.47
VIT_11s0016g02580.t01	Wine grape	mitochondrion	30.47	9.33

Protein Annotations

Gene3D:1.20.1260.60	EntrezGene:100853848	wikigene:100853848	EntrezGene:100854227	wikigene:100854227	MapMan:35.2
ProteinID:CCB61103	ProteinID:CCB61103.1	UniProt:F6I2D6	EMBL:FN596551	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	EntrezGene:LOC100853848	wikigene:LOC100853848	EntrezGene:LOC100854227	wikigene:LOC100854227
PFAM:PF03398	PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	UniParc:UPI0002108642	ArrayExpress:VIT_00s0302g00010	EnsemblPlantsGene:VIT_00s0302g00010
EnsemblPlants:VIT_00s0302g00010.t01	unigene:Vvi.14888	RefSeq:XP_003635213	RefSeq:XP_003635213.1	RefSeq:XP_003635529	RefSeq:XP_003635529.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:22239246..22241073

Molecular Weight (calculated)

40202.1 Da

IEP (calculated)

5.838

GRAVY (calculated)

-0.718

Length

361 amino acids

Sequence
(BLAST)

001: VEHVIREQNI LAANEFLELF CELIIARLTI ISKQRDCPAD LKEGISSLIF AAPRCSDIPE LLAIRDNFEK KYGKDFVSAA TDLRPSCGVN RMLIDKLSVR
101: TPMGEVKLKV MKEIAKEYQI EWDTTESENE LLKPPEELIN GPCTFVSASS MPVKPKPSQP SDLNKPTARS TGTEERPPMH FKDMESAAEA AAESANKAIA
201: AAQAAAYLAN KGPNLVTQSP GFNNNLNVSS TDHGLRSYSQ NNMGYEAKIP GRMHESQSFD RSHHLNTEER RPNNGDDRQA YRRHSYNAPS AHSNIKFDES
301: DSDEEIETQD TYAGIQPPPG RDPPPVPPSH FQQSPVPSVH PKLPDYDALT ARFEALKYRK S

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.