Factsheet for Zm00001d021453_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99304	Sorghum	plastid	83.56	91.04
Os09t0547200-01	Rice	mitochondrion	68.07	74.79
TraesCS5D01G353300.1	Wheat	mitochondrion	64.24	69.71
TraesCS5A01G346800.1	Wheat	plastid	63.67	68.66
TraesCS5B01G347800.1	Wheat	mitochondrion	63.48	68.59
HORVU5Hr1G086370.1	Barley	nucleus, plastid	63.48	60.81
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	10.9	57.0
Zm00001d028142_P001	Maize	cytosol	10.9	57.0
VIT_00s1235g00010.t01	Wine grape	mitochondrion	35.76	53.74
Zm00001d052541_P001	Maize	extracellular	13.19	47.92
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	32.12	46.54
KRH69704	Soybean	mitochondrion	38.81	46.35
KRH07948	Soybean	mitochondrion	38.81	46.03
CDY69937	Canola	plastid	36.14	45.54
CDX75521	Canola	plastid	37.48	45.27
Bra011633.1-P	Field mustard	mitochondrion, plastid	37.48	45.06
Bra010522.1-P	Field mustard	plastid	36.14	44.89
GSMUA_Achr3P26880_001	Banana	mitochondrion	36.52	44.21
CDY41639	Canola	plastid	36.14	43.95
CDX69159	Canola	plastid	36.9	43.86
PGSC0003DMT400003908	Potato	plastid	39.2	41.92
AT4G35730.1	Thale cress	plastid	36.9	41.42
Zm00001d043813_P001	Maize	mitochondrion	23.9	38.94
Solyc02g083130.2.1	Tomato	plastid	39.2	37.75
Zm00001d028457_P001	Maize	mitochondrion	12.43	32.5
Zm00001d034058_P004	Maize	mitochondrion	11.28	31.05
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	29.25	28.02
Zm00001d024425_P003	Maize	cytosol	29.06	26.81
Zm00001d033714_P001	Maize	mitochondrion	17.97	26.78
Zm00001d034057_P001	Maize	mitochondrion	11.47	26.2
Zm00001d047886_P001	Maize	mitochondrion	12.05	25.2
Zm00001d047887_P001	Maize	mitochondrion	11.66	24.5
Zm00001d047885_P001	Maize	mitochondrion	11.66	24.4
Zm00001d047884_P001	Maize	cytosol	5.74	20.98
Zm00001d028456_P001	Maize	mitochondrion	16.83	16.57
Zm00001d011684_P002	Maize	nucleus, plastid	30.98	13.38
Zm00001d053852_P001	Maize	nucleus	15.87	12.12
Zm00001d014521_P001	Maize	mitochondrion	14.72	9.99
Zm00001d036913_P001	Maize	cytosol	6.12	5.24
Zm00001d051744_P001	Maize	nucleus	2.87	2.99

Protein Annotations

EnsemblPlants:Zm00001d021453_P002	EnsemblPlants:Zm00001d021453_T002	EnsemblPlantsGene:Zm00001d021453	EntrezGene:100191296	Gene3D:1.20.1260.60	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	PFAM:PF03398
ProteinID:ONM57203.1	SEG:seg	UniParc:UPI0008452F5A	UniProt:A0A1D6IB82	MapMan:35.2	:

Description

Regulator of Vps4 activity in the MVB pathway protein

Coordinates

chr7:+:152605084..152608082

Molecular Weight (calculated)

59278.1 Da

IEP (calculated)

6.948

GRAVY (calculated)

-0.683

Length

523 amino acids

Sequence
(BLAST)

001: MAAMMMATSE SKSPARALRR LAGAAVAAVL LRRTFSASKC KTEARMATAR MKLLRNRREA QVRQMRRDIA ALLRDKQEDT ARIRSHMEDK SFLDFSVRSA
101: LGTPVMFNPY VEHVIREQNF MAANEIIELF CELIVTRLPI IAKQKFVFNY HHLPKLICSH KECPADLKEG ICSLIFAAPR CSELPELGRI RDIFEKKYGK
201: DFVSAAVDLR PDAAVNNLLI EKLSIKKPSG QIKLKVLKDI AKEHQIDWDT AESEQELLKP PEELIKGPST FLEASNMPVK NILTPYTVQP DPVNFSYRCS
301: DDEYDDRGTM QFKDAASAAR AAAESAERAT SAAKAAADFV NNNNNNHPFD EDEDCKASTH EFTHTLKRQS MSNSSRSSLK EDANAFDEQK PHEGKTYSAR
401: RFSGKNHVEY DKDGYPADLD LKTRRRNCRA ARKVHSEIKF DDSEGLCSES EGENDVEIQS VERPLPPKSE LFSENRHSED EEHDQDFPEL PKTNLHSRVH
501: PNMPLDYETL TARFEALKSG KLP

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.