Factsheet for Zm00001d043813_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33152	Sorghum	mitochondrion	94.39	94.39
Zm00001d052541_P001	Maize	extracellular	38.01	84.72
Os01t0687700-01	Rice	mitochondrion, plasma membrane	81.31	81.82
TraesCS3D01G263400.1	Wheat	mitochondrion, plastid	81.0	81.5
TraesCS3A01G263500.1	Wheat	mitochondrion, plastid	80.69	81.19
TraesCS3B01G296700.1	Wheat	mitochondrion, plastid	80.37	80.88
HORVU3Hr1G063860.1	Barley	plastid	80.06	70.8
GSMUA_Achr3P29510_001	Banana	mitochondrion	62.62	61.66
GSMUA_Achr9P21370_001	Banana	mitochondrion	62.62	61.47
KRG90825	Soybean	mitochondrion	58.88	58.33
KRH35947	Soybean	mitochondrion	58.57	58.02
VIT_01s0011g03610.t01	Wine grape	mitochondrion	58.88	57.45
Solyc04g007230.2.1	Tomato	mitochondrion	56.39	56.04
Bra012478.1-P	Field mustard	mitochondrion	51.71	51.39
CDY58595	Canola	mitochondrion	51.71	51.39
CDY53122	Canola	mitochondrion	51.4	51.08
AT1G25420.1	Thale cress	mitochondrion	51.4	51.08
Zm00001d028142_P001	Maize	cytosol	13.08	42.0
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	12.77	41.0
Zm00001d028457_P001	Maize	mitochondrion	20.25	32.5
Zm00001d034058_P004	Maize	mitochondrion	18.69	31.58
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	43.61	25.64
Zm00001d024425_P003	Maize	cytosol	44.86	25.4
Zm00001d034057_P001	Maize	mitochondrion	18.07	25.33
Zm00001d047885_P001	Maize	mitochondrion	19.31	24.8
Zm00001d047887_P001	Maize	mitochondrion	19.0	24.5
Zm00001d047886_P001	Maize	mitochondrion	19.0	24.4
Zm00001d033714_P001	Maize	mitochondrion	26.17	23.93
Zm00001d021453_P002	Maize	plastid	38.94	23.9
Zm00001d047884_P001	Maize	cytosol	9.03	20.28
Zm00001d028456_P001	Maize	mitochondrion	24.92	15.07
Zm00001d011684_P002	Maize	nucleus, plastid	38.94	10.32
Zm00001d053852_P001	Maize	nucleus	20.56	9.64
Zm00001d014521_P001	Maize	mitochondrion	18.07	7.52
Zm00001d036913_P001	Maize	cytosol	9.03	4.75
Zm00001d051744_P001	Maize	nucleus	3.12	1.99

Protein Annotations

Gene3D:1.20.1260.60	EntrezGene:100273933	MapMan:35.2	UniProt:B4FY70	EMBL:BT042058	EMBL:BT042122
EMBL:BT061875	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	ProteinID:ONM39137.1
ProteinID:ONM39138.1	ProteinID:ONM39139.1	PFAM:PF03398	PANTHER:PTHR12161	PANTHER:PTHR12161:SF28	UniParc:UPI00017B772D
EnsemblPlantsGene:Zm00001d043813	EnsemblPlants:Zm00001d043813_P001	EnsemblPlants:Zm00001d043813_T001	SEG:seg	:	:

Description

Regulator of Vps4 activity in the MVB pathway protein

Coordinates

chr3:+:210926554..210936267

Molecular Weight (calculated)

35130.2 Da

IEP (calculated)

8.715

GRAVY (calculated)

-0.216

Length

321 amino acids

Sequence
(BLAST)

001: MSSLNSLFNR STFGTKCKTC LNLVISRIKL LRNRRELQLI NMRKEMVQYL QTGQESIARI RVEHIIREQN ILAAYEIVEL FCEFVLARVP IVEVQKECPL
101: ELREAIASII FASGRCSDLP ELMHLRNLFT TKYGKEFVAG AMELRPDSSV NRTIIEKLSV KAPSGDSKLK VLKAIAQEYN IEWDSSNTEA EFNKKYEDLL
201: DGSGSSVHQI QTPIIEGSVS SPVVSAPRDK TPALNSPVID AEKHQVRESP TSPAGGARAG VVTKGNVVTM GHHSPAEEMP STSPSSSDAL EKARAAIAAA
301: TRASAAARAA AELAKVKITN Q

Best Arabidopsis Sequence Match ( AT1G25420.1 )
(BLAST)

001: MSLLNQLFNR GIFGAKCKTS LNLAIARMKL LQNKRDMQLK HMKKEIAHFL QAGQEPIARI RVEHVIREMN LWAAYEILEL FCEFILARVP ILESEKECPR
101: ELREAIASII FAAPRCSEVP DLLQIKNLFG TKYGKEFIMV ASELRPDSGV NRTIIEKLSP TSPSGAARLK MLKEIAQEYS LNWDSSATEA EFMKSHEDLL
201: GGAKQIHRQD GISESRPSQQ GYGQSSVSRE VESLPAEATQ RFQKLQAQNP VSKSMPSSKL TSAFQAPPDT RRNQTDVMEI ARAALASADR ATAAARAAAQ
301: LVNVSYGATT PTVAAEGKPL NLM

Arabidopsis Description

At1g25420/F2J7_16 [Source:UniProtKB/TrEMBL;Acc:Q9C6L2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.