Factsheet for VIT_01s0011g03610.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052541_P001	Maize	extracellular	30.4	69.44
KRG90825	Soybean	mitochondrion	67.17	68.21
KRH35947	Soybean	mitochondrion	66.26	67.28
Solyc04g007230.2.1	Tomato	mitochondrion	64.13	65.33
Bra012478.1-P	Field mustard	mitochondrion	61.7	62.85
CDY58595	Canola	mitochondrion	61.7	62.85
AT1G25420.1	Thale cress	mitochondrion	61.09	62.23
CDY53122	Canola	mitochondrion	60.79	61.92
GSMUA_Achr9P21370_001	Banana	mitochondrion	58.66	59.02
KXG33152	Sorghum	mitochondrion	57.45	58.88
Zm00001d043813_P001	Maize	mitochondrion	57.45	58.88
GSMUA_Achr3P29510_001	Banana	mitochondrion	57.14	57.67
Os01t0687700-01	Rice	mitochondrion, plasma membrane	55.32	57.05
TraesCS3D01G263400.1	Wheat	mitochondrion, plastid	55.32	57.05
TraesCS3A01G263500.1	Wheat	mitochondrion, plastid	55.02	56.74
TraesCS3B01G296700.1	Wheat	mitochondrion, plastid	54.71	56.43
KXG19452	Sorghum	mitochondrion	44.38	53.09
HORVU3Hr1G063860.1	Barley	plastid	54.41	49.31
VIT_14s0006g03050.t01	Wine grape	mitochondrion	18.84	39.74
VIT_00s1235g00010.t01	Wine grape	mitochondrion	39.82	37.64
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	31.31	28.53
VIT_18s0164g00040.t01	Wine grape	nucleus	46.5	28.39
VIT_12s0059g01700.t01	Wine grape	golgi	19.45	27.47
VIT_01s0011g03330.t01	Wine grape	mitochondrion	28.57	20.09
VIT_09s0002g04580.t01	Wine grape	nucleus	18.84	12.38
VIT_11s0016g02580.t01	Wine grape	mitochondrion	36.17	10.09
VIT_11s0016g04010.t01	Wine grape	nucleus	21.88	9.92

Protein Annotations

Gene3D:1.20.1260.60	EntrezGene:100261039	wikigene:100261039	MapMan:35.2	ProteinID:CBI27012	ProteinID:CBI27012.3
UniProt:D7T941	EMBL:FN595752	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1
EntrezGene:LOC100261039	wikigene:LOC100261039	PFAM:PF03398	PANTHER:PTHR12161	PANTHER:PTHR12161:SF28	UniParc:UPI00015C7F3E
ArrayExpress:VIT_01s0011g03610	EnsemblPlantsGene:VIT_01s0011g03610	EnsemblPlants:VIT_01s0011g03610.t01	unigene:Vvi.8765	RefSeq:XP_002282696	RefSeq:XP_002282696.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:3265564..3270042

Molecular Weight (calculated)

36200.2 Da

IEP (calculated)

8.053

GRAVY (calculated)

-0.330

Length

329 amino acids

Sequence
(BLAST)

001: MSLLNQLFNR GILGAKCKTC LNLAISRIKL LQNKRSLHLK QMRKEIAQFL QTGQEAIARI RVEHVIREQN IWAAYEILEL FCEFVLARVP ILETQRECPT
101: ELREAVASII FAAPRCSDVP DLLQIKNLFA AKYGKEFILA ASELRPDTSV NRAIIEKLSV STPTGEAKLK QLKEIAQEYN LEWDSSNTEA EFSKKHEDLL
201: DGSKQVCSGG AISQAPSIQS SLQCPPTSEP NVISSRTIQQ GIQALHSPNT ASKKSLSSPD EVEHSIKSYN AGQVSDSKET RSQSSDILER ARAAIASADR
301: ASAAARAAAE LANITFGPWK LEEGQSPKG

Best Arabidopsis Sequence Match ( AT1G25420.1 )
(BLAST)

001: MSLLNQLFNR GIFGAKCKTS LNLAIARMKL LQNKRDMQLK HMKKEIAHFL QAGQEPIARI RVEHVIREMN LWAAYEILEL FCEFILARVP ILESEKECPR
101: ELREAIASII FAAPRCSEVP DLLQIKNLFG TKYGKEFIMV ASELRPDSGV NRTIIEKLSP TSPSGAARLK MLKEIAQEYS LNWDSSATEA EFMKSHEDLL
201: GGAKQIHRQD GISESRPSQQ GYGQSSVSRE VESLPAEATQ RFQKLQAQNP VSKSMPSSKL TSAFQAPPDT RRNQTDVMEI ARAALASADR ATAAARAAAQ
301: LVNVSYGATT PTVAAEGKPL NLM

Arabidopsis Description

At1g25420/F2J7_16 [Source:UniProtKB/TrEMBL;Acc:Q9C6L2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.