CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043813_P001	Maize	mitochondrion	94.39	94.39
Os01t0687700-01	Rice	mitochondrion, plasma membrane	81.31	81.82
TraesCS3D01G263400.1	Wheat	mitochondrion, plastid	81.0	81.5
TraesCS3A01G263500.1	Wheat	mitochondrion, plastid	80.69	81.19
TraesCS3B01G296700.1	Wheat	mitochondrion, plastid	79.75	80.25
HORVU3Hr1G063860.1	Barley	plastid	80.06	70.8
KXG19452	Sorghum	mitochondrion	60.12	70.18
GSMUA_Achr9P21370_001	Banana	mitochondrion	64.17	63.0
GSMUA_Achr3P29510_001	Banana	mitochondrion	63.24	62.27
KRG90825	Soybean	mitochondrion	58.57	58.02
KRH35947	Soybean	mitochondrion	58.26	57.72
VIT_01s0011g03610.t01	Wine grape	mitochondrion	58.88	57.45
Solyc04g007230.2.1	Tomato	mitochondrion	57.01	56.66
CDY58595	Canola	mitochondrion	52.34	52.01
Bra012478.1-P	Field mustard	mitochondrion	52.34	52.01
AT1G25420.1	Thale cress	mitochondrion	51.4	51.08
CDY53122	Canola	mitochondrion	51.4	51.08
EER92528	Sorghum	mitochondrion	19.94	34.41
KXG24567	Sorghum	cytosol, plastid	45.17	28.1
OQU90964	Sorghum	mitochondrion	14.33	27.54
EER99304	Sorghum	plastid	39.25	26.25
EER93588	Sorghum	mitochondrion	25.86	24.27
EER92527	Sorghum	mitochondrion, plastid	26.17	15.67
EES04550	Sorghum	nucleus	22.12	10.4
EES03498	Sorghum	nucleus, plastid	38.32	9.94
KXG20673	Sorghum	cytosol, nucleus, plastid	20.25	8.28

Protein Annotations

EnsemblPlants:KXG33152	EnsemblPlantsGene:SORBI_3003G261400	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF28	PFAM:PF03398	ProteinID:KXG33151.1	ProteinID:KXG33152
ProteinID:KXG33152.1	ProteinID:KXG33153.1	SEG:seg	UniParc:UPI00022072A9	UniProt:A0A1B6Q5G1	MapMan:35.2

Description

hypothetical protein

Coordinates

chr3:-:59911536..59915483

Molecular Weight (calculated)

35155.3 Da

IEP (calculated)

8.368

GRAVY (calculated)

-0.203

Length

321 amino acids

Sequence
(BLAST)

001: MSSLNSLFNR STFGTKCKTC LNLVISRIKL LRNRRDLQLI NMRKEMVQYL QTGQESIARI RVEHIIREQN ILAAYEIIEL FCEFVLARVP IVEVQKECPL
101: ELREAIGSII FASGRCSDLP ELMHLRNLFT TKYGKEFVAG AMELRPDSSV NRTIIEKLSV KAPSGESKLK VLKAIAQEYN IEWDSSNTEA EFNKKYEDLL
201: DGSGSSVHQV QPPIIEGSVS SPVASASRDK LAALNSPVID AEKHQIRESP TSLAGGTRAC VATKGNVATM EHHSPAEEMP STSPSSSDAL EKARAAIAAA
301: TRASAAARAA AELAKVKITS Q

Best Arabidopsis Sequence Match ( AT1G25420.1 )
(BLAST)

001: MSLLNQLFNR GIFGAKCKTS LNLAIARMKL LQNKRDMQLK HMKKEIAHFL QAGQEPIARI RVEHVIREMN LWAAYEILEL FCEFILARVP ILESEKECPR
101: ELREAIASII FAAPRCSEVP DLLQIKNLFG TKYGKEFIMV ASELRPDSGV NRTIIEKLSP TSPSGAARLK MLKEIAQEYS LNWDSSATEA EFMKSHEDLL
201: GGAKQIHRQD GISESRPSQQ GYGQSSVSRE VESLPAEATQ RFQKLQAQNP VSKSMPSSKL TSAFQAPPDT RRNQTDVMEI ARAALASADR ATAAARAAAQ
301: LVNVSYGATT PTVAAEGKPL NLM

Arabidopsis Description

At1g25420/F2J7_16 [Source:UniProtKB/TrEMBL;Acc:Q9C6L2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.