CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028142_P001	Maize	cytosol	7.92	98.0
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	7.84	97.0
Zm00001d011684_P002	Maize	nucleus, plastid	79.87	81.59
Os01t0706400-01	Rice	plasma membrane	51.9	58.31
TraesCS3D01G253500.1	Wheat	nucleus	52.38	58.01
TraesCS3B01G284600.1	Wheat	nucleus	51.74	57.61
TraesCS3A01G252800.1	Wheat	cytosol	50.93	56.35
CDY04642	Canola	cytosol	6.79	56.0
TraesCS3B01G288900.2	Wheat	plastid	52.14	55.99
HORVU3Hr1G066420.1	Barley	nucleus	52.87	55.28
KXG33152	Sorghum	mitochondrion	9.94	38.32
KXG19452	Sorghum	mitochondrion	7.92	35.64
EER99304	Sorghum	plastid	12.93	33.33
KRH60150	Soybean	cytosol, mitochondrion, nucleus, plastid	15.6	33.22
KXG24567	Sorghum	cytosol, plastid	12.77	30.62
EER92528	Sorghum	mitochondrion	4.53	30.11
KRH49036	Soybean	mitochondrion	23.44	27.54
CDX82713	Canola	mitochondrion	20.45	27.53
KRH74171	Soybean	mitochondrion	23.52	27.35
Bra039012.1-P	Field mustard	mitochondrion	20.21	27.26
CDY35879	Canola	mitochondrion	20.21	27.26
KRH41442	Soybean	cytosol	9.62	26.68
AT2G19710.1	Thale cress	mitochondrion, nucleus	19.64	25.93
Solyc07g032230.2.1	Tomato	nucleus	21.91	25.26
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	22.15	25.25
Bra011109.1-P	Field mustard	mitochondrion	18.76	25.22
CDY43502	Canola	mitochondrion	18.59	24.6
EER93588	Sorghum	mitochondrion	6.71	24.27
OQU90964	Sorghum	mitochondrion	3.07	22.75
GSMUA_Achr1P14380_001	Banana	nucleus	22.55	22.41
AT4G29440.1	Thale cress	mitochondrion	19.64	22.29
EER92527	Sorghum	mitochondrion, plastid	7.19	16.6
VIT_11s0016g02580.t01	Wine grape	mitochondrion	15.6	16.37
EES04550	Sorghum	nucleus	7.52	13.62
KXG20673	Sorghum	cytosol, nucleus, plastid	7.44	11.72

Protein Annotations

EnsemblPlants:EES03498	EnsemblPlantsGene:SORBI_3003G272400	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF13	PFAM:PF03398	ProteinID:EES03498
ProteinID:EES03498.2	SEG:seg	UniParc:UPI00081ADCB3	UniProt:C5XHN0	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr3:+:60870034..60875740

Molecular Weight (calculated)

136239.0 Da

IEP (calculated)

7.872

GRAVY (calculated)

-0.948

Length

1237 amino acids

Sequence
(BLAST)

0001: MDGVESSQLP TKKIRSQNSQ PKVRMLHWPQ MQSRQAVFCT EASRPKRRAP RTRPVVPGRS RSIHRASAPI DNAEAKRRGR LPLPCGARRE STPASNEKTI
0101: RLLRSAKRYF GGAPVSHGFG WIRIKPGDTG FVPRAREAEM HKSKGKLSGV LHKGFKPDKC KTSLRMAVAR IKLLRNRKEV QVRQMRREVA QLLEANQDMT
0201: ARIRVEHVIR EEKFMQAYDL IEVYCELIVA RLSIIDSQKT CPIDLKEAVA SVVFASMRCS DVTELADVRK HFKSKYGKEF EAAALEVRPD SGVNRLVIEK
0301: LSAGAPDIQT KIKTLSSIAE EHNIKWEPKA FEEKLQQPNE NPLYGSATYS GGNISTMGSS TSSMSTPQPT YSGVSAAAVD SATSHVSMGP SPVHVPANRT
0401: TYGNASSNTF SKENIHNSSS ASVPPISQHG PSAYSSAQTP GSNNISHGNP GGPPYPQYSA TAPDTASRNG EIRQHRERKP SVTGANWNVE FKDATSAAQA
0501: AAESAEMASI AARAAAELAS RGNYSGDKGT GAYDSAAYSS ENTPRKQQAE HIVKDEKSFH NQSSGVNDPR VMPSNSRKSF GGTETTRVDS QNISTDKAPY
0601: QQFGSYSPEN HPYVYEMPTE PPHAHSPDPR FDDLYERESD IGRSEVHPFD FPEENLQDTG PVGRNFKDVE IRRPSSDHES TDDYYGNFNS SHDTFAHGSS
0701: STAWDKQNDK AQGNSSPVVF DQYDSDVEEE NLLDTFSSKH TEQLPDPRDH MGFSTADWSE QHRSESPSNQ KTSALFSRRE TQLSDNLGTN RSDIPSPHSY
0801: DNLHPAFDSD GGNSDEEIAT TMHAVSLRSH SGRSHPGGSV SSGLNKGGGP DGSLYDYSGA QAVRNLNRVQ SRDSDLSEEE TDLDKFKGSS SAGANEQQSL
0901: PFAISTSAAS DDKEGDIGLN FGRLTPGLRN KTRQPPPYTK VSRESILPKQ SLPTVSSSTE ESVDSEENTS FKQNISSPKS SFSARTNSGK NHDSELYERN
1001: QNAGTHWEAR STIARNSFGL ADTEKLSELP SNISLPTTKS SERANSSQVL YHEKPGIGAR RGLRSTMARN YFDTDDSEEE LEQQQTPQSK RSGVLIQSRR
1101: TREVTSDTKR ESRIQIGAQY DDETESMPSK TQVHQGFNSS STEQRTEMRD ASVYPRVAVQ RSSPKAQQIE SPVARRKPQE AEMRRNFVGG NEGDAETSAG
1201: TPKESTPKTP PAHVHPKLPT DYDSFAAHFR SLRTNRP

Best Arabidopsis Sequence Match ( AT2G19710.1 )
(BLAST)

001: MKKVLQRGFK PAKCKTALQM ANSRLKILKN KKEIQIKQLR RELAQLLESG QTPTARIRVE HVVREEKTVA AYELIGIYCE LLVVRLGVIE SQKNCPIDLK
101: EAVTSVLFAS QRLSDVPELS EIFKQFTTKY GKDFSTSAVE LRPDSGVSRL LVEKLSAKAP DGPTKVKILM AIAEEHNVVW EAQSFVESDP KDTELLNGAN
201: SFQPASSMNM DSSINSNKEQ PPNIHAPATV NAHHGSSERH HSPENSYANG GRSSSRSNNV TSGKADDYYH SKARPSRSRP DEGECRNPNH GYENSSSRNK
301: QKWEPEFVDS TDAARAAAEA AERASFAARA AAELSNKERM TRQDSTQSHI SSASVNLRNE PSHRRDRSNA QRESFSEDHV SPRRNVRMQY EDMDRTRQDR
401: YDRAEQIPPV DQPSGRHSVD NSRNNGSFGR EKQPSQDETD INVGYSEDVH LRKQSSRVSS HSHSSNYSDE NDLGSDFMKS PSIVEENIFA TEYDHQSQSS
501: FKDIDSHDHG HDDDAAATDN YDDYSSFFYQ PKFHAEDNHY QDEIDHGVGF SLLGSKTSAS AASWSFKGDH SKSHGKHSSS SSQVFQENPS SRLFDDVSTS
601: PPASYHEPDP HAKFDNYGPN SESDGDQPID KVSGDVHERG NLTSDRSHKF KVSDSAGHEV FPLDTEEHTD NSRTREESDS DSEPQLGLRL GALAGGFRNK
701: KTLPPYRMSS ASSKAEKEYI QIDDFGQSSR KDLYSKKASN TETRPSFMPP HPSSSDEDDS DMQHPGRTET KSDSLYSHSR VNHDDSEEEK LPTRSSSRIQ
801: ERSHKPSTGI RVQKRTNFKM PVSASSEDEE EVEREAARIN AKPNKTTGYG FSLRTKGQSK ANEKHSLPVT TKKTDKESHD QPSPRTVTSS HVPQTVKSPD
901: PDTPSRERER ASHVHPNLPE YDDIFARLGA LRAPSRR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4ITF9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.