Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G253500.1 | Wheat | nucleus | 85.46 | 90.51 |
| TraesCS3B01G284600.1 | Wheat | nucleus | 84.53 | 90.01 |
| TraesCS3A01G252800.1 | Wheat | cytosol | 83.94 | 88.82 |
| TraesCS3B01G288900.2 | Wheat | plastid | 85.12 | 87.41 |
| Zm00001d028142_P001 | Maize | cytosol | 7.35 | 87.0 |
| Zm00001d048482_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 7.27 | 86.0 |
| Os01t0706400-01 | Rice | plasma membrane | 59.34 | 63.76 |
| CDY04642 | Canola | cytosol | 7.02 | 55.33 |
| EES03498 | Sorghum | nucleus, plastid | 55.28 | 52.87 |
| Zm00001d011684_P002 | Maize | nucleus, plastid | 53.59 | 52.35 |
| HORVU3Hr1G063860.1 | Barley | plastid | 9.89 | 32.23 |
| HORVU3Hr1G098720.3 | Barley | cytosol | 13.95 | 32.16 |
| HORVU4Hr1G062250.1 | Barley | mitochondrion | 4.99 | 32.07 |
| KRH60150 | Soybean | cytosol, mitochondrion, nucleus, plastid | 15.55 | 31.67 |
| CDX82713 | Canola | mitochondrion | 21.56 | 27.75 |
| CDY35879 | Canola | mitochondrion | 21.47 | 27.7 |
| Bra039012.1-P | Field mustard | mitochondrion | 21.47 | 27.7 |
| HORVU5Hr1G086370.1 | Barley | nucleus, plastid | 12.68 | 27.47 |
| AT2G19710.1 | Thale cress | mitochondrion, nucleus | 21.47 | 27.11 |
| KRH49036 | Soybean | mitochondrion | 24.01 | 26.97 |
| KRH74171 | Soybean | mitochondrion | 24.18 | 26.88 |
| Bra011109.1-P | Field mustard | mitochondrion | 20.46 | 26.3 |
| CDY43502 | Canola | mitochondrion | 20.29 | 25.67 |
| KRH41442 | Soybean | cytosol | 9.55 | 25.34 |
| PGSC0003DMT400030456 | Potato | mitochondrion, nucleus, plastid | 23.16 | 25.25 |
| Solyc07g032230.2.1 | Tomato | nucleus | 22.57 | 24.88 |
| AT4G29440.1 | Thale cress | mitochondrion | 21.22 | 23.03 |
| GSMUA_Achr1P14380_001 | Banana | nucleus | 23.84 | 22.65 |
| HORVU4Hr1G062260.2 | Barley | plastid | 5.16 | 21.4 |
| VIT_11s0016g02580.t01 | Wine grape | mitochondrion | 16.74 | 16.79 |
| HORVU4Hr1G062110.1 | Barley | mitochondrion | 7.61 | 16.42 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 8.11 | 13.04 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 7.86 | 12.81 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G066420.1 | EnsemblPlantsGene:HORVU3Hr1G066420 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF13 | PFAM:PF03398 | SEG:seg | UniParc:UPI000B488914 |
| UniProt:A0A287LFC2 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:505434344..505441034
Molecular Weight (calculated)
130887.0 Da
IEP (calculated)
5.961
GRAVY (calculated)
-1.038
Length
1183 amino acids
Sequence
(BLAST)
(BLAST)
0001: MHRSKGKLSG VLSKGFKPDK CKIALKMAMA RIKLLRNKKE VQVRQMRREV AQLLDGNQDQ TARIRVEHVI REEKFMQAYD LIEVYCELIV ARMSIIDSQK
0101: TCPIDLKEAV ASVIFASMRC SDVTELADVR KNFTSKYGKE FAASALEVRP DSGVNRLVFF CFSVFELDEG FAAVYFSKQL LCIQVIEKLS AGAPDVQTKT
0201: KTLSSIAAEH NIKWEPKAFE EQKQNEDRMY GSTYSGGNVP TPGSSASSVP TPQPAAAPYS SVQSATSRVP AGPSYESSEA PANRNPHGTA NSNASTQENR
0301: RESDASVPPT SQHGATTSSA DIPGSNSFSH VNTGSSSVSR PYSQFGTTVP DPVSRTEEIN RPRERKSSAS GSNWNVEFKD AASAAQAAAD SAEMASIAAR
0401: AACQLASRGN FYAEQDTGAY ESATYTNDTT PRKQQAERLM KNDKSFNEQS SGVNDPTMIS SNTRKDEERA ETNRVSSQNM STPYSSQFHS YAPENHTDMY
0501: DMPTEPHRAH SSGPPYFDDS SEAPYFDDPS EKESNIGRPE DHPFDLHEER LPDAGFDGHR TKDIGSRQGS FDQESRNDHY NNFGASHGGS STTWDNQNDK
0601: AGADSSAVIF DHYDYDVQEE NLFDRFSSKH TEELPAIQDH KGFSSADWSQ QHRSESPVDR STSTLFSRTE TQPPYDLGAN KEDIPLNDTK PPTFDSDGVS
0701: SDEETSTDMQ ILSLRTNSRG SDYSENRMFN KNSGKFVPDV NDSIEDHESR PRKQYQNPPG SDVFRKEQNS DGSPKYDYSG AQGNLGRVES RDYDLSEEET
0801: EAHKLKGTSS GITGANENRP SPFRMQTSAP SDDSDDGDLG LNYGRLTPGL RNKLRQHPQY KIPGDSLPCK QSLEGAPASI EESVHFKENG TSSEQTGDTH
0901: KGSRTAKNSF GANYQSEHLD GRHTVGKPVE SRSPMTRNDF YSGESRSSLT RNDFYSGESR SSLTRNDFYS GDTGKLSERS GSSPIRSPTK TSVKENSIQE
1001: PHHERPGSGV RRESRSRTAR TFFDSDESEE ELERRQSGQT KLSKEQIRSR RTPREVAPDT KRDGRARTGA QFAVETESPK SPAKAFSSSS TEERKVAPVY
1101: SRVSVQQSSP NPVRIEPPMA RGKWQEDEPE GSSSPENEAN TQTSADTLKV STPTSGPAHV HPKLPTDYDS FAAHFKSLRT NRR
0101: TCPIDLKEAV ASVIFASMRC SDVTELADVR KNFTSKYGKE FAASALEVRP DSGVNRLVFF CFSVFELDEG FAAVYFSKQL LCIQVIEKLS AGAPDVQTKT
0201: KTLSSIAAEH NIKWEPKAFE EQKQNEDRMY GSTYSGGNVP TPGSSASSVP TPQPAAAPYS SVQSATSRVP AGPSYESSEA PANRNPHGTA NSNASTQENR
0301: RESDASVPPT SQHGATTSSA DIPGSNSFSH VNTGSSSVSR PYSQFGTTVP DPVSRTEEIN RPRERKSSAS GSNWNVEFKD AASAAQAAAD SAEMASIAAR
0401: AACQLASRGN FYAEQDTGAY ESATYTNDTT PRKQQAERLM KNDKSFNEQS SGVNDPTMIS SNTRKDEERA ETNRVSSQNM STPYSSQFHS YAPENHTDMY
0501: DMPTEPHRAH SSGPPYFDDS SEAPYFDDPS EKESNIGRPE DHPFDLHEER LPDAGFDGHR TKDIGSRQGS FDQESRNDHY NNFGASHGGS STTWDNQNDK
0601: AGADSSAVIF DHYDYDVQEE NLFDRFSSKH TEELPAIQDH KGFSSADWSQ QHRSESPVDR STSTLFSRTE TQPPYDLGAN KEDIPLNDTK PPTFDSDGVS
0701: SDEETSTDMQ ILSLRTNSRG SDYSENRMFN KNSGKFVPDV NDSIEDHESR PRKQYQNPPG SDVFRKEQNS DGSPKYDYSG AQGNLGRVES RDYDLSEEET
0801: EAHKLKGTSS GITGANENRP SPFRMQTSAP SDDSDDGDLG LNYGRLTPGL RNKLRQHPQY KIPGDSLPCK QSLEGAPASI EESVHFKENG TSSEQTGDTH
0901: KGSRTAKNSF GANYQSEHLD GRHTVGKPVE SRSPMTRNDF YSGESRSSLT RNDFYSGESR SSLTRNDFYS GDTGKLSERS GSSPIRSPTK TSVKENSIQE
1001: PHHERPGSGV RRESRSRTAR TFFDSDESEE ELERRQSGQT KLSKEQIRSR RTPREVAPDT KRDGRARTGA QFAVETESPK SPAKAFSSSS TEERKVAPVY
1101: SRVSVQQSSP NPVRIEPPMA RGKWQEDEPE GSSSPENEAN TQTSADTLKV STPTSGPAHV HPKLPTDYDS FAAHFKSLRT NRR
001: MKKVLQRGFK PAKCKTALQM ANSRLKILKN KKEIQIKQLR RELAQLLESG QTPTARIRVE HVVREEKTVA AYELIGIYCE LLVVRLGVIE SQKNCPIDLK
101: EAVTSVLFAS QRLSDVPELS EIFKQFTTKY GKDFSTSAVE LRPDSGVSRL LVEKLSAKAP DGPTKVKILM AIAEEHNVVW EAQSFVESDP KDTELLNGAN
201: SFQPASSMNM DSSINSNKEQ PPNIHAPATV NAHHGSSERH HSPENSYANG GRSSSRSNNV TSGKADDYYH SKARPSRSRP DEGECRNPNH GYENSSSRNK
301: QKWEPEFVDS TDAARAAAEA AERASFAARA AAELSNKERM TRQDSTQSHI SSASVNLRNE PSHRRDRSNA QRESFSEDHV SPRRNVRMQY EDMDRTRQDR
401: YDRAEQIPPV DQPSGRHSVD NSRNNGSFGR EKQPSQDETD INVGYSEDVH LRKQSSRVSS HSHSSNYSDE NDLGSDFMKS PSIVEENIFA TEYDHQSQSS
501: FKDIDSHDHG HDDDAAATDN YDDYSSFFYQ PKFHAEDNHY QDEIDHGVGF SLLGSKTSAS AASWSFKGDH SKSHGKHSSS SSQVFQENPS SRLFDDVSTS
601: PPASYHEPDP HAKFDNYGPN SESDGDQPID KVSGDVHERG NLTSDRSHKF KVSDSAGHEV FPLDTEEHTD NSRTREESDS DSEPQLGLRL GALAGGFRNK
701: KTLPPYRMSS ASSKAEKEYI QIDDFGQSSR KDLYSKKASN TETRPSFMPP HPSSSDEDDS DMQHPGRTET KSDSLYSHSR VNHDDSEEEK LPTRSSSRIQ
801: ERSHKPSTGI RVQKRTNFKM PVSASSEDEE EVEREAARIN AKPNKTTGYG FSLRTKGQSK ANEKHSLPVT TKKTDKESHD QPSPRTVTSS HVPQTVKSPD
901: PDTPSRERER ASHVHPNLPE YDDIFARLGA LRAPSRR
101: EAVTSVLFAS QRLSDVPELS EIFKQFTTKY GKDFSTSAVE LRPDSGVSRL LVEKLSAKAP DGPTKVKILM AIAEEHNVVW EAQSFVESDP KDTELLNGAN
201: SFQPASSMNM DSSINSNKEQ PPNIHAPATV NAHHGSSERH HSPENSYANG GRSSSRSNNV TSGKADDYYH SKARPSRSRP DEGECRNPNH GYENSSSRNK
301: QKWEPEFVDS TDAARAAAEA AERASFAARA AAELSNKERM TRQDSTQSHI SSASVNLRNE PSHRRDRSNA QRESFSEDHV SPRRNVRMQY EDMDRTRQDR
401: YDRAEQIPPV DQPSGRHSVD NSRNNGSFGR EKQPSQDETD INVGYSEDVH LRKQSSRVSS HSHSSNYSDE NDLGSDFMKS PSIVEENIFA TEYDHQSQSS
501: FKDIDSHDHG HDDDAAATDN YDDYSSFFYQ PKFHAEDNHY QDEIDHGVGF SLLGSKTSAS AASWSFKGDH SKSHGKHSSS SSQVFQENPS SRLFDDVSTS
601: PPASYHEPDP HAKFDNYGPN SESDGDQPID KVSGDVHERG NLTSDRSHKF KVSDSAGHEV FPLDTEEHTD NSRTREESDS DSEPQLGLRL GALAGGFRNK
701: KTLPPYRMSS ASSKAEKEYI QIDDFGQSSR KDLYSKKASN TETRPSFMPP HPSSSDEDDS DMQHPGRTET KSDSLYSHSR VNHDDSEEEK LPTRSSSRIQ
801: ERSHKPSTGI RVQKRTNFKM PVSASSEDEE EVEREAARIN AKPNKTTGYG FSLRTKGQSK ANEKHSLPVT TKKTDKESHD QPSPRTVTSS HVPQTVKSPD
901: PDTPSRERER ASHVHPNLPE YDDIFARLGA LRAPSRR
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4ITF9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.