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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • mitochondrion 1
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G064920.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G79910.1 HORVU2Hr1G064920.1 AT2G39760.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G345200.1 Wheat cytosol, nucleus, plastid 90.91 90.78
TraesCS7D01G433700.1 Wheat cytosol, mitochondrion, nucleus 90.63 90.63
TraesCS7A01G445700.1 Wheat cytosol, mitochondrion, nucleus 88.29 90.41
Os06t0687000-00 Rice mitochondrion 57.3 57.06
GSMUA_Achr5P23530_001 Banana nucleus 13.09 53.07
KXG20673 Sorghum cytosol, nucleus, plastid 53.86 49.81
KRH06586 Soybean cytosol 4.13 49.18
Zm00001d014521_P001 Maize mitochondrion 51.1 48.12
HORVU6Hr1G025460.3 Barley nucleus 42.56 41.98
KRG89505 Soybean mitochondrion 10.74 41.27
GSMUA_Achr6P29590_001 Banana cytosol 23.83 37.77
CDX87282 Canola cytosol 10.33 37.13
Zm00001d051744_P001 Maize nucleus 24.1 34.86
Zm00001d036913_P001 Maize cytosol 27.82 33.06
PGSC0003DMT400042551 Potato nucleus 13.77 32.36
Solyc06g066690.2.1 Tomato nucleus 13.77 32.36
KRH44367 Soybean mitochondrion 14.33 32.3
VIT_09s0002g04580.t01 Wine grape nucleus 22.18 32.14
CDX87899 Canola nucleus 11.98 31.52
CDY37561 Canola nucleus 16.25 31.3
KRH47048 Soybean mitochondrion 16.39 31.15
Bra008502.1-P Field mustard nucleus 16.25 31.13
CDY52976 Canola mitochondrion 13.22 31.07
CDY41108 Canola nucleus 15.98 30.69
AT1G79910.1 Thale cress nucleus 15.84 30.18
GSMUA_Achr9P11280_001 Banana cytosol, mitochondrion, nucleus, plastid 27.96 30.16
KRH23458 Soybean mitochondrion 16.53 30.08
Bra035204.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 7.16 30.06
CDY49898 Canola mitochondrion 11.29 29.93
GSMUA_Achr8P15690_001 Banana mitochondrion 27.55 29.85
CDY49897 Canola nucleus 10.88 29.48
CDX87900 Canola mitochondrion 11.29 28.47
Solyc03g120120.2.1 Tomato nucleus 18.18 27.73
PGSC0003DMT400014529 Potato nucleus 17.08 27.56
AT1G52315.1 Thale cress mitochondrion 13.09 27.38
Bra018962.1-P Field mustard extracellular, vacuole 13.36 27.25
Solyc12g043150.1.1 Tomato nucleus 18.59 26.47
HORVU4Hr1G062250.1 Barley mitochondrion 6.34 25.0
CDX68838 Canola nucleus 20.52 23.65
VIT_11s0016g04010.t01 Wine grape nucleus 23.55 23.55
PGSC0003DMT400092826 Potato nucleus 13.77 23.53
CDX75238 Canola nucleus 20.39 23.45
KRH39280 Soybean mitochondrion, nucleus 22.86 22.59
KRH48400 Soybean mitochondrion, nucleus 22.59 22.31
KRH60286 Soybean nucleus 21.76 20.63
PGSC0003DMT400022180 Potato nucleus 15.43 20.29
Solyc07g022860.2.1 Tomato nucleus 15.29 20.15
AT4G32350.1 Thale cress nucleus 20.11 19.95
KRH41578 Soybean nucleus 21.9 19.92
HORVU4Hr1G062260.2 Barley plastid 6.89 17.54
HORVU3Hr1G063860.1 Barley plastid 8.26 16.53
Bra030391.1-P Field mustard nucleus 11.02 16.0
HORVU5Hr1G086370.1 Barley nucleus, plastid 10.61 14.1
HORVU3Hr1G098720.3 Barley cytosol 9.92 14.04
HORVU4Hr1G062110.1 Barley mitochondrion 10.19 13.5
HORVU3Hr1G066420.1 Barley nucleus 12.81 7.86
Protein Annotations
EnsemblPlants:HORVU7Hr1G101130.3EnsemblPlantsGene:HORVU7Hr1G101130Gene3D:1.20.1260.60GO:GO:0006810GO:GO:0008150GO:GO:0015031
InterPro:Ist1ncoils:CoilPANTHER:PTHR12161PANTHER:PTHR12161:SF40PFAM:PF03398SEG:seg
UniParc:UPI000B483CDDUniProt:A0A287XL24MapMan:35.2:::
Description
No Description!
Coordinates
chrchr7H:-:607719753..607724362
Molecular Weight (calculated)
81083.6 Da
IEP (calculated)
8.422
GRAVY (calculated)
-0.971
Length
726 amino acids
Sequence
(BLAST)
001: RMFDGLINSK FYNRCKHAFK CIRTRLVVIR RKKQAMIGFL KKDVADLIAN GLDIHAFGRM DALIMEMNHA SCYNMIEQYC DTLGKQLNSL QKQRDCPQES
101: MEAVSTLIFA TARFPDLPEL CDLRHIFTER YGGSLEPFVS LEFIRKLESE LFTDEEKFQV MQSIAEESSV GFDMRALEIK LWAARESEDD LLEKDSMEKG
201: ELAVPLPINQ KDDCQLNDST GRKNSDKSHG KEQLEKSVSP LDLKRENTPK DDNTRRRHAD KADGKEHLEK SVSPLQKERE EAQKRAQKLK KKDVRPSEKE
301: LMEAVELDIN GLPKQGSGSV KFPETESNII IPPIVKPKET KKEHGVEKEN NRGLGYHHRS PIPGRPDYTR RHANLGCKAL GLQNQGPTSP NPSSGKTINR
401: PTPNSNPNGA KGRNCDEKEE GNSCLRGRPQ HLEDLGHTVQ NGQRAPQRVA DVQPPYVKPK LGIQHVNDDP AKPIDSNCNM TERTGRLADK DVLRPVSVRR
501: RPAAPSYDET PNDEKVTIRK ANIHRTQPSK HKGANEGYDR KGNGVGNGRN VERTPSGRPS PSGMRNGVQY DDDYGGSMQQ PKAGEDETAI DFGDLSPQAA
601: NSHHRLNSRN TDVHGGDPDE EERMMDKLLM HYSKKGLGTD ETKTTVETSR TANCQGAQTQ CQQNGSLHTP GRAVSLPPES ISPGEAAKVP ARSTSLRSNC
701: PGSVRVHPKM PDFEELAARV MALRNA
Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.