Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 6
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49898 | Canola | mitochondrion | 59.65 | 75.55 |
| CDY52976 | Canola | mitochondrion | 67.15 | 75.4 |
| CDX87900 | Canola | mitochondrion | 61.1 | 73.61 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 72.05 | 70.22 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 21.33 | 41.34 |
| Bra030391.1-P | Field mustard | nucleus | 58.21 | 40.4 |
| AT1G79910.1 | Thale cress | nucleus | 30.55 | 27.82 |
| AT3G15490.1 | Thale cress | mitochondrion, nucleus | 14.12 | 23.22 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 24.5 | 18.56 |
| AT2G14830.1 | Thale cress | mitochondrion | 19.88 | 17.97 |
| AT1G25420.1 | Thale cress | mitochondrion | 16.14 | 17.34 |
| AT4G35730.1 | Thale cress | plastid | 20.75 | 15.45 |
| Os02t0159200-01 | Rice | nucleus | 29.39 | 15.11 |
| Zm00001d053852_P001 | Maize | nucleus | 29.68 | 15.04 |
| AT1G13340.1 | Thale cress | mitochondrion | 17.58 | 14.91 |
| EES04550 | Sorghum | nucleus | 29.11 | 14.79 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 30.84 | 14.54 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 27.95 | 14.48 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 29.68 | 14.41 |
| AT4G32350.1 | Thale cress | nucleus | 30.26 | 14.34 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 29.39 | 14.31 |
| Os06t0687000-00 | Rice | mitochondrion | 29.97 | 14.27 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 29.39 | 14.27 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 27.67 | 14.26 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 27.95 | 13.68 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 30.55 | 13.5 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 28.24 | 13.48 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 27.95 | 13.36 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 27.38 | 13.09 |
| Zm00001d014521_P001 | Maize | mitochondrion | 28.82 | 12.97 |
| AT1G34220.1 | Thale cress | nucleus | 20.17 | 10.79 |
| AT1G51900.1 | Thale cress | mitochondrion | 17.58 | 7.88 |
| AT2G19710.1 | Thale cress | mitochondrion, nucleus | 17.29 | 6.4 |
| Zm00001d036913_P001 | Maize | cytosol | 10.95 | 6.22 |
| AT4G29440.1 | Thale cress | mitochondrion | 17.87 | 5.69 |
| Zm00001d051744_P001 | Maize | nucleus | 5.76 | 3.98 |
Protein Annotations
| Gene3D:1.20.1260.60 | EntrezGene:2745821 | MapMan:35.2 | ProteinID:AEE32781.1 | ArrayExpress:AT1G52315 | EnsemblPlantsGene:AT1G52315 |
| RefSeq:AT1G52315 | TAIR:AT1G52315 | RefSeq:AT1G52315-TAIR-G | EnsemblPlants:AT1G52315.1 | TAIR:AT1G52315.1 | ncoils:Coil |
| UniProt:F4ICV8 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:Ist1 | RefSeq:NP_974006.1 |
| PFAM:PF03398 | PO:PO:0000293 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | UniParc:UPI000034F595 | SEG:seg |
Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4ICV8]
Coordinates
chr1:+:19481046..19482863
Molecular Weight (calculated)
40005.9 Da
IEP (calculated)
9.646
GRAVY (calculated)
-0.639
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLRCFKPKF YKKSKSTTSY MKIRIDIVRR KRIAMVRNYK TDIVNFLKNG QDSEAYRRAE LLLEELRIIS CYDLIERFCD CISENLSLML KKRECPEECR
101: EAVSSLIYAT AWVPDVPELK DLRAVFTKRF GNFIASSVNH ELVEKTELLR PPSRELKIQT VKDVANEFSI NWDPTPLKLM LLRETSALQI KDKVETRADY
201: LNKDTEKSFM DEHSDDESVL SESWRIDSLS KGSLSSSSSS SSSSLRRVSV RKKKGKKILP YGIISSPDTK LGAGNDEKAQ EEKEEKRKIA DQENSRLLGI
301: QGSRSLTSTS NNEVSTIREN ERMSSFQRPN LLDYDDVVAR LAALRRR
101: EAVSSLIYAT AWVPDVPELK DLRAVFTKRF GNFIASSVNH ELVEKTELLR PPSRELKIQT VKDVANEFSI NWDPTPLKLM LLRETSALQI KDKVETRADY
201: LNKDTEKSFM DEHSDDESVL SESWRIDSLS KGSLSSSSSS SSSSLRRVSV RKKKGKKILP YGIISSPDTK LGAGNDEKAQ EEKEEKRKIA DQENSRLLGI
301: QGSRSLTSTS NNEVSTIREN ERMSSFQRPN LLDYDDVVAR LAALRRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.